sim_init_graphics: Graphics of simulation initialisation
In Moritz-Kohls/virDisco2: Virus Discovery

Description Usage Arguments Details Value Examples

This function produces graphics based on the statistical distributions of the original sam-files which are generated by the function sim_init. The function plots distributions of nucleotide, mapping quality, read length, start position and quality value of all mapped viruses together and top three mapped viruses. and writes the plots into one pdf-file.

1	sim_init_graphics(file_indices = rep(NA_integer_, 0))

file_indices

Indices of the sam-files to produce graphics of

Before using the function sim_init_graphics, the functions create_directories_and_file_paths, extract_information_from_reference_genome and sim_init must be executed.

None