Description Usage Arguments Details Value Examples
This function produces graphics based on the statistical distributions of the original sam-files and the sam-files produced by mapping of the simulated fastq-files
which are generated by the function sim_init
with parameters "init" and "sim".
The function plots distributions of nucleotide, mapping quality, read length, start position and quality value of all mapped viruses together and top three mapped viruses
for both types of sam-files and writes the plots into one pdf-file.
1 | sim_sam_graphics(file_indices = rep(NA_integer_, 0))
|
file_indices |
Indices of the sam-files to produce graphics of |
Before using the function sim_init_graphics
, the functions create_directories_and_file_paths
, extract_information_from_reference_genome
and sim_init
with parameters "init" and "sim" must be executed.
None
1 | sim_sam_graphics ( file_indices = 1 )
|
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