Man pages for MultinomialMutations/MultinomialMutations
Fast multinomial regression for large cancer mutation datasets
| add_counts | Adding pseudo counts to the number of mutations |
| add_counts_pres_mut | Adding pseudo counts to the number of mutations |
| cancermutations | Mutations in tumor DNA |
| chrom21 | Chromosome 21 for multinomial regression |
| count_table_prep_multinom | Count table for multinomial regression |
| deviance_loss | Deviance loss function for multinomial regression |
| fast_multinom | Fast multinomial logistic regression on large and sparse... |
| make.bdiag | Function to make a block diagonal matrix from a quadratic... |
| mimp | Multiple imputation for count data |
| nested_sum_contrasts | Sum contrasts for a nested factor |
| nested_treatment_contrasts | Treatment contrasts for a nested factor |
| pooling | Pooling for multinomial regression |
| predict.fast_multinom | Prediction method for fast_multinom fits |
| sumstats_orig | Computing simple summary statistics on the original data |
| wrapper_fast_multinom | Wrapper for the function fast_multinom |
| wrapper_loss | Wrapper to estimate the deviance loss by cross-validation |
| wrapper_multinom_dataprep | Wrapper for the preparation of mutation data for multinomial... |
| wrapper_prior_pseudo_counts | Wrapper to add prior pseudo counts to the mutation data |
