sample_pair_distance: Sample Pair Distance
In NCBI-Hackathons/HLAClustRView: HLA typing clustering and visualization based on specific similarity metrics
Description
Usage
Arguments
Value
Author(s)
Examples
View source: R/calculateSimilarity.R
Description
Computes the Hamming Distance for a pair of samples and then
aggregates the
sum over the genes keeping information of which allele was used for
the distance
Usage
1
sample_pair_distance(sample_pair_data)
Arguments
sample_pair_data
a tibble with columns GeneName (genes),
Allele (alleles), Digit1 (digit 1) and sample (see example data)
Value
a tibble object with one row and column HammingDistance &
column data corresponding to the same_allele information
Author(s)
Santiago Medina, Nissim Ranade
Examples
1
2
3
4
5
## Load example dataset
data("example_sample_pair_data")
## Computes the Hamming distance for one pair of samples
HLAClustRView:::sample_pair_distance(example_sample_pair_data)
NCBI-Hackathons/HLAClustRView documentation built on Nov. 22, 2019, 6:11 a.m.
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Description Usage Arguments Value Author(s) Examples
View source: R/calculateSimilarity.R
Description
Computes the Hamming Distance for a pair of samples and then aggregates the sum over the genes keeping information of which allele was used for the distance
Usage
1 | sample_pair_distance(sample_pair_data)
|
Arguments
sample_pair_data |
a |
Value
a tibble object with one row and column HammingDistance &
column data corresponding to the same_allele information
Author(s)
Santiago Medina, Nissim Ranade
Examples
1 2 3 4 5 | ## Load example dataset
data("example_sample_pair_data")
## Computes the Hamming distance for one pair of samples
HLAClustRView:::sample_pair_distance(example_sample_pair_data)
|
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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