Description Usage Arguments Value
View source: R/classification.R
Assuming equal chance of assignment given the matched sequence, this function calculates membership proportion of motifs per chromatin loop.
1 | bin_motifs(motifs, chromLoops, j, M, m)
|
motifs |
A dataframe of matched motifs with at least the following attributes:
|
chromLoops |
A row of a dataframe containing hierarchically clustered chromatin loops. Compatible with output of the annotator3D::cluster function. The row should have at least the following attributes:
|
j |
An integer denoting the index of the chromatin loop for classification |
M |
An n-by-m numeric matrix to be used as a dynamic array of one chromatin loop. |
m |
An integer denoting the number of predicted loops. |
M An n-by-m numeric matrix storing calculated membership scores.
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