calculate_overflow: Calculate Amount of Motif Length to Hard chromatin loop...

In NElnour/annotator3D: Classification of genome motifs or features to TADs

Description

Calculates 'overflow' of a motif's length across chromatin loop boundaries. It returns the proportion of motif's length that overlaps with the chromatin loop specified by chromLoop_thresh.

Usage

calculate_overflow(motif_thresh, chromLoop_thresh, motif_len)

Arguments

motif_thresh	An integer denoting the motif's coordinate.
chromLoop_thresh	An integer denoting the chromatin loop boundary (hard)
motif_len	An integer denoting the length of the motif

Value

A double measuring the proportion of the motif's length to the chromatin loop boundary.

NElnour/annotator3D documentation built on Dec. 8, 2019, 9:22 a.m.