weighted.faith: Abundance weighted calculation of Faiths PD index

In NGSwenson/lefse_0.5: Phylogenetic and Functional Analyses for Ecology

Description

Quantifying Faiths index of phylogenetic diversity weighting species contributions by their abundance

Usage

weighted.faith(my.phylo, my.sample)

Arguments

my.phylo	A phylo
my.sample	A community data matrix

Value

The abundance weighted Faiths index value.

Author(s)

Nathan G. Swenson

References

Swenson, N.G. 2014. Functional and Phylogenetic Ecology in R. Springer UseR! Series, Springer, New York, New York, U.S.A.

Examples

data(lefse.sample)
data(lefse.phylo)
weighted.faith(lefse.phylo,lefse.sample)

NGSwenson/lefse_0.5 documentation built on May 7, 2019, 6:01 p.m.