Man pages for NINAnor/oneimpact
Tools for the assessment of the cumulative impacts of anthropogenic features in ecological studies
| add_zoi_formula | Adds ZOI radii to formula |
| add_zoi_layers | Create ZOI layer names as strings for data annotation |
| bag_fit_net_functions | Fit a bag of conditional logistic regression/SSF/iSSF models... |
| bag_load_models | Load a series of files output of fit_net_clogit models and... |
| bag_models | Summary of a bag of models |
| bag_predict_spat | Predict bag of models in space |
| calc_zoi | Calculates the zone of influence from the nearest feature and... |
| calc_zoi_cumulative | Calculate the cumulative zone of influence of multiple... |
| calc_zoi_nearest | Calculate the zone of influence from the nearest feature |
| calc_zoi_sql | Compute Zone of Influence for points and annotate them to... |
| concordance_indices | Computes the conditional Boyce index for model evaluation |
| create_linear_feature_zoi | Creates a line feature and gets the value of their zone of... |
| create_resamples | Create samples for fitting, calibrating, and validating... |
| explore_blocks | Explore hierarchical blocks after sampling or spatial... |
| explore_blocks_pre | Explore potential hierarchical blocks before sampling or... |
| extract_response_strata | Separates elements in a statistical formula |
| filter_create | Create filters or kernel matrices for raster neighborhood... |
| filter_na_strata | Remove missing values and ensure case-control per stratum |
| filter_save | Save kernel/filter matrix to use outside R |
| fit_net_functions | Fits a conditional logistic regression/SSF/iSSF with... |
| grass_binarize | Binarize continuous raster maps |
| grass_find_layer | Find layers within GRASS GIS with multiple patterns |
| grass_v2rast_count | Rasterizes a vector counting the number of features in each... |
| hypothesis_func | Function to set penalties according to hypotheses |
| isolation | Isolation and mean isolation of points in space |
| kernel_prediction | Prediction based only on step length terms |
| net_clogit | Fits a conditional logistic regression/SSF/iSSF using glmnet |
| net_logit | Fits a logistic regression/RSF using glmnet |
| plot_coef | Plot the coefficients of bags of models |
| plot_importance | Plot variable importance |
| plot_response | Plot responses from a bag of models |
| plot_zoi1d | Plot the functions for the nearest and cumulative zone of... |
| predict | Prediction of a bag of models to new data |
| pretty_seq | Set sampling parameters |
| raster_rescale | Rescale raster values |
| rast_predictors_hardanger_500.tif | Predictor environmental variables for the Hardangervidda wild... |
| reindeer | GPS positions for wild reindeer in Norway. |
| reindeer_area.gpkg | Reindeer area: a polygon vector data for the Setesdal Austhei... |
| reindeer_cabins.gpkg | Cabins vector data for the reindeer area |
| reindeer_roads_private.gpkg | Private roads vector data for the reindeer area |
| reindeer_roads_public.gpkg | Public roads vector data for the reindeer area |
| reindeer_rsf | Annotated data of wild reindeer in Norway, prepared for point... |
| reindeer_ssf | Annotated data of wild reindeer in Norway, prepared for... |
| rescale_coefficients | Rescale standardized coefficients back to their original... |
| sample_area_cabins_count.tif | Cabin count raster data for the sample area |
| sample_area_cabins.gpkg | Cabins vector data for the sample area |
| sample_area_cabins.tif | Cabin presence raster data for the sample area |
| sample_area.gpkg | Sample area: a polygon vector data |
| sample_area_roads.gpkg | Road vector data for the sample area |
| sample_area_roads.tif | Road raster data for the sample area |
| set_points | Simulate points in a landscape |
| set_points_from_raster | Simulate points using input raster as weights |
| set_points_sample | Simulate regular or random points in 2D |
| spat_strat | Preparing data for spatially stratified crossâvalidation... |
| variable_importance | Computes variable importance |
| weirdness | Computes ecological weirdness for a fitted model or it... |
| zoi_functions | Zone of Influence (ZOI) functions |
