NRSC/nphys
R package for interpreting neurphysiology field and whole-cell data

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NRSC/nphys: R package for interpreting neurphysiology field and whole-cell data
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Files in NRSC/nphys
R package for interpreting neurphysiology field and whole-cell data

.Rbuildignore
.gitattributes
.github/FUNDING.yml
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
R/APanalysis.R R/calculate_impedence.R R/convertIndex.R R/dfs_ABF.R R/dvdt_mV.R R/editNphys.R R/epochDF_from_nwb_comments.R R/epochStimulus.R R/epochs_from_nwb_stimulus.R R/epochs_from_stimulus.R R/expDay.R R/extractNWB.R R/fileD.R R/fpks.R R/groupify.R R/identify_points.R R/importABF.R R/isolateAPs.R R/isolateSegment.R R/ksmoothVec.R R/lmROI.R R/n_fun.R R/nwbPlot_sweep.R R/pZero.R R/plotVoid.R R/plotVoidNWB.R R/r.pyABF.R R/r.pyIPFX.R R/reticABF.R R/rmFlag.R R/stimArtifcat.R R/testPulse.R R/threshold_downsampling.R R/utils-pipe.R R/vmAvg.R R/write_exp_metadataNWB.R R/wrkD.R R/zeroAdjust.R R/zzz.R README.md data-raw/abf_fieldLTD/fieldLTD.R data-raw/field-data.R data-raw/field.R data-raw/projNphys.R
data/abf_NaV/210518_HEK293_SS2-mdD2AT.csv
data/ccExa.rda
data/field.rda
dev/ExampleApp.R dev/ExpDay.R dev/build_proj.R dev/commentsNWB.R dev/db.R dev/extractNWB.R dev/getDATA.R dev/load_rda.R dev/rda2list.R dev/segmentFFT.R dev/segmentFilter.R
figs/TestPulse.png
figs/achRectifies.png
figs/ap.png
figs/field-Summary.png
figs/optoAch_1.png
figs/optoAch_2.png
figs/scripts/ccInj.mat.R figs/scripts/nphysFigs.R
figs/spikeCount.png
figs/wcSummary/1-IV-1-Control.jpg
figs/wcSummary/17518.P4-NMDAgrd.jpg
figs/wcSummary/17518.P4-PPgrd.jpg
figs/wcSummary/17518.P4_BlvEt.jpg
figs/wcSummary/2-IV-2-Control.jpg
figs/wcSummary/3-IO-3-Control.jpg
inst/CITATION
inst/extdata/LTD/AP5/LTD-AP5_1/AP5_1-LTD.RDs
inst/extdata/LTD/AP5/LTD-AP5_1/AP5_1-LTD.rda
inst/extdata/LTD/AP5/LTD-AP5_1/AP5_1-LTDMD.csv
inst/extdata/LTD/AP5/LTD-AP5_1/AP5_1-LTDSummary.png
inst/extdata/LTD/AP5/LTD-AP5_2/AP5_2-LTD.RDs
inst/extdata/LTD/AP5/LTD-AP5_2/AP5_2-LTD.rda
inst/extdata/LTD/AP5/LTD-AP5_2/AP5_2-LTDMD.csv
inst/extdata/LTD/AP5/LTD-AP5_2/AP5_2-LTDSummary.png
inst/extdata/LTD/AP5/LTD-AP5_3/AP5_3-LTD.RDs
inst/extdata/LTD/AP5/LTD-AP5_3/AP5_3-LTD.rda
inst/extdata/LTD/AP5/LTD-AP5_3/AP5_3-LTDMD.csv
inst/extdata/LTD/AP5/LTD-AP5_3/AP5_3-LTDSummary.png
inst/extdata/LTD/AP5/LTD-AP5_4/AP5_4-LTD.RDs
inst/extdata/LTD/AP5/LTD-AP5_4/AP5_4-LTD.rda
inst/extdata/LTD/AP5/LTD-AP5_4/AP5_4-LTDMD.csv
inst/extdata/LTD/AP5/LTD-AP5_4/AP5_4-LTDSummary.png
inst/extdata/LTD/Control/LTD-CS_1/CS_1-LTD.RDs
inst/extdata/LTD/Control/LTD-CS_1/CS_1-LTD.rda
inst/extdata/LTD/Control/LTD-CS_1/CS_1-LTDMD.csv
inst/extdata/LTD/Control/LTD-CS_1/CS_1-LTDSummary.png
inst/extdata/LTD/Control/LTD-CS_2/CS_2-LTD.RDs
inst/extdata/LTD/Control/LTD-CS_2/CS_2-LTD.rda
inst/extdata/LTD/Control/LTD-CS_2/CS_2-LTDMD.csv
inst/extdata/LTD/Control/LTD-CS_2/CS_2-LTDSummary.png
inst/extdata/LTD/Control/LTD-CS_3/CS_3-LTD.RDs
inst/extdata/LTD/Control/LTD-CS_3/CS_3-LTD.rda
inst/extdata/LTD/Control/LTD-CS_3/CS_3-LTDMD.csv
inst/extdata/LTD/Control/LTD-CS_3/CS_3-LTDSummary.png
inst/extdata/LTD/Control/LTD-CS_4/CS_4-LTD.RDs
inst/extdata/LTD/Control/LTD-CS_4/CS_4-LTD.rda
inst/extdata/LTD/Control/LTD-CS_4/CS_4-LTDMD.csv
inst/extdata/LTD/Control/LTD-CS_4/CS_4-LTDSummary.png
inst/extdata/LTD/Control/LTD-CS_5/CS_5-LTD.RDs
inst/extdata/LTD/Control/LTD-CS_5/CS_5-LTD.rda
inst/extdata/LTD/Control/LTD-CS_5/CS_5-LTDMD.csv
inst/extdata/LTD/Control/LTD-CS_5/CS_5-LTDSummary.png
inst/extdata/LTD/Control/LTD-CS_6/CS_6-LTD.RDs
inst/extdata/LTD/Control/LTD-CS_6/CS_6-LTD.png
inst/extdata/LTD/Control/LTD-CS_6/CS_6-LTD.rda
inst/extdata/LTD/Control/LTD-CS_6/CS_6-LTDMD.csv
inst/extdata/cClamp/2019-08-20_S1/P1/2019-08-20_S0_P1.csv
inst/extdata/cClamp/2019-08-20_S1/P2/2019-08-20_S0_P2.csv
inst/extdata/cClamp/2019-08-20_S1/P3/2019-08-20_S0_P3.csv
inst/extdata/cClamp/2019-08-20_S1/P4/2019-08-20_S0_P4.csv
inst/extdata/cClamp/2019-12-10_S1/P1/2019-12-10_S1_P1.csv
inst/extdata/cClamp/2019-12-10_S1/P1/2019-12-10_S1_P1.rda
inst/extdata/cClamp/2019-12-10_S1/P1/2019-12-10_S1_P1.rmd
inst/extdata/cClamp/2019-12-10_S1/P2/2019-12-10_S1_P2.csv
inst/extdata/cClamp/2019-12-10_S1/P2/2019-12-10_S1_P2.rda
inst/extdata/cClamp/2019-12-10_S1/P2/2019-12-10_S1_P2.rmd
inst/extdata/cClamp/2019-12-10_S1/P3/2019-12-10_S1_P3.csv
inst/extdata/cClamp/2019-12-10_S1/P3/2019-12-10_S1_P3.rda
inst/extdata/cClamp/2019-12-10_S1/P3/2019-12-10_S1_P3.rmd
inst/extdata/field/field-exa.rda
inst/extdata/field/field-exaMD.csv
inst/extdata/field/field-exaSum.png
inst/extdata/patch/Et100/17713.P1/17713.P1-Pro.csv
inst/extdata/patch/Et100/17713.P1/17713.P1-SliceMD.csv
inst/extdata/patch/Et100/17713.P1/17713.P1.png
inst/extdata/patch/Et100/17713.P1/17713.P1.rda
inst/extdata/patch/Et100/17713.P1/17713.P1_BlvEt.jpg
inst/extdata/patch/Et100/17713.P1/EtOH[100mM]-17713.P1/1-IV-1-Control.jpg
inst/extdata/patch/Et100/17713.P1/EtOH[100mM]-17713.P1/17713.P1-NMDAgrd.jpg
inst/extdata/patch/Et100/17713.P1/EtOH[100mM]-17713.P1/17713.P1-PPgrd.jpg
inst/extdata/patch/Et100/17713.P1/EtOH[100mM]-17713.P1/2-IV-2-Control.jpg
inst/extdata/patch/Et100/17713.P1/EtOH[100mM]-17713.P1/3-IO-3-Control.jpg
inst/extdata/patch/Et50/17503.P3/17503.P3-Pro.csv
inst/extdata/patch/Et50/17503.P3/17503.P3-SliceMD.csv
inst/extdata/patch/Et50/17503.P3/17503.P3.png
inst/extdata/patch/Et50/17503.P3/17503.P3.rda
inst/extdata/patch/Et50/17503.P3/17503.P3_BlvEt.jpg
inst/extdata/patch/Et50/17503.P3/EtOH[50mM]-17503.P3/1-IV-1-Control.jpg
inst/extdata/patch/Et50/17503.P3/EtOH[50mM]-17503.P3/17503.P3-NMDAgrd.jpg
inst/extdata/patch/Et50/17503.P3/EtOH[50mM]-17503.P3/17503.P3-PPgrd.jpg
inst/extdata/patch/Et50/17503.P3/EtOH[50mM]-17503.P3/2-IV-2-Control.jpg
inst/extdata/patch/Et50/17503.P3/EtOH[50mM]-17503.P3/3-IO-3-Control.jpg
inst/extdata/patch/Et50/17518.P4/17518.P4-Pro.csv
inst/extdata/patch/Et50/17518.P4/17518.P4-SliceMD.csv
inst/extdata/patch/Et50/17518.P4/17518.P4.png
inst/extdata/patch/Et50/17518.P4/17518.P4.rda
inst/extdata/patch/Et50/17518.P4/17518.P4_BlvEt.jpg
inst/extdata/patch/Et50/17518.P4/EtOH[50mM]-17518.P4/1-IV-1-Control.jpg
inst/extdata/patch/Et50/17518.P4/EtOH[50mM]-17518.P4/17518.P4-NMDAgrd.jpg
inst/extdata/patch/Et50/17518.P4/EtOH[50mM]-17518.P4/17518.P4-PPgrd.jpg
inst/extdata/patch/Et50/17518.P4/EtOH[50mM]-17518.P4/2-IV-2-Control.jpg
inst/extdata/patch/Et50/17518.P4/EtOH[50mM]-17518.P4/3-IO-3-Control.jpg
inst/extdata/wcEtOH/Et100/wDGDev-Et100_P1/17713.P1-Pro.csv
inst/extdata/wcEtOH/Et100/wDGDev-Et100_P1/17713.P1-SliceMD.csv
inst/extdata/wcEtOH/Et100/wDGDev-Et100_P1/17713.P1.rda
inst/extdata/wcEtOH/Et100/wDGDev-Et100_P1/figs/1-IV-1-Control.jpg
inst/extdata/wcEtOH/Et100/wDGDev-Et100_P1/figs/17713.P1-NMDAgrd.jpg
inst/extdata/wcEtOH/Et100/wDGDev-Et100_P1/figs/17713.P1-PPgrd.jpg
inst/extdata/wcEtOH/Et100/wDGDev-Et100_P1/figs/17713.P1.png
inst/extdata/wcEtOH/Et100/wDGDev-Et100_P1/figs/17713.P1_BlvEt.jpg
inst/extdata/wcEtOH/Et100/wDGDev-Et100_P1/figs/2-IV-2-Control.jpg
inst/extdata/wcEtOH/Et100/wDGDev-Et100_P1/figs/3-IO-3-Control.jpg
inst/extdata/wcEtOH/Et100/wDGDev-Et100_P2/17713.P2-Pro.csv
inst/extdata/wcEtOH/Et100/wDGDev-Et100_P2/17713.P2-SliceMD.csv
inst/extdata/wcEtOH/Et100/wDGDev-Et100_P2/17713.P2.rda
inst/extdata/wcEtOH/Et100/wDGDev-Et100_P2/figs/1-IV-1-Control.jpg
inst/extdata/wcEtOH/Et100/wDGDev-Et100_P2/figs/17713.P2-NMDAgrd.jpg
inst/extdata/wcEtOH/Et100/wDGDev-Et100_P2/figs/17713.P2-PPgrd.jpg
inst/extdata/wcEtOH/Et100/wDGDev-Et100_P2/figs/17713.P2.png
inst/extdata/wcEtOH/Et100/wDGDev-Et100_P2/figs/17713.P2_BlvEt.jpg
inst/extdata/wcEtOH/Et100/wDGDev-Et100_P2/figs/2-IV-2-Control.jpg
inst/extdata/wcEtOH/Et100/wDGDev-Et100_P2/figs/3-IO-3-Control.jpg
inst/extdata/wcEtOH/Et100/wDGDev-Et100_P3/17419.P3-Pro.csv
inst/extdata/wcEtOH/Et100/wDGDev-Et100_P3/17419.P3-SliceMD.csv
inst/extdata/wcEtOH/Et100/wDGDev-Et100_P3/17419.P3.rda
inst/extdata/wcEtOH/Et100/wDGDev-Et100_P3/figs/1-IV-1-Control.jpg
inst/extdata/wcEtOH/Et100/wDGDev-Et100_P3/figs/17419.P3-AMPAgrd.jpg
inst/extdata/wcEtOH/Et100/wDGDev-Et100_P3/figs/17419.P3-NMDAgrd.jpg
inst/extdata/wcEtOH/Et100/wDGDev-Et100_P3/figs/17419.P3-PPgrd.jpg
inst/extdata/wcEtOH/Et100/wDGDev-Et100_P3/figs/17419.P3.png
inst/extdata/wcEtOH/Et100/wDGDev-Et100_P3/figs/2-IV-2-Control.jpg
inst/extdata/wcEtOH/Et100/wDGDev-Et100_P3/figs/3-IO-3-Control.jpg
inst/extdata/wcEtOH/Et50/wDGDev-Et50_P1/2020-05-22_S1_P1-Pro.csv
inst/extdata/wcEtOH/Et50/wDGDev-Et50_P1/2020-05-22_S1_P1-SliceMD.csv
inst/extdata/wcEtOH/Et50/wDGDev-Et50_P1/2020-05-22_S1_P1.rda
inst/extdata/wcEtOH/Et50/wDGDev-Et50_P2/17518.P4-Pro.csv
inst/extdata/wcEtOH/Et50/wDGDev-Et50_P2/17518.P4-SliceMD.csv
inst/extdata/wcEtOH/Et50/wDGDev-Et50_P2/17518.P4.rda
inst/extdata/wcEtOH/Et50/wDGDev-Et50_P2/figs/1-IV-1-Control.jpg
inst/extdata/wcEtOH/Et50/wDGDev-Et50_P2/figs/17518.P4-NMDAgrd.jpg
inst/extdata/wcEtOH/Et50/wDGDev-Et50_P2/figs/17518.P4-PPgrd.jpg
inst/extdata/wcEtOH/Et50/wDGDev-Et50_P2/figs/17518.P4.png
inst/extdata/wcEtOH/Et50/wDGDev-Et50_P2/figs/17518.P4_BlvEt.jpg
inst/extdata/wcEtOH/Et50/wDGDev-Et50_P2/figs/2-IV-2-Control.jpg
inst/extdata/wcEtOH/Et50/wDGDev-Et50_P2/figs/3-IO-3-Control.jpg
inst/extdata/wcEtOH/Et50/wDGDev-Et50_P3/17714.P1-Pro.csv
inst/extdata/wcEtOH/Et50/wDGDev-Et50_P3/17714.P1-SliceMD.csv
inst/extdata/wcEtOH/Et50/wDGDev-Et50_P3/17714.P1.png
inst/extdata/wcEtOH/Et50/wDGDev-Et50_P3/17714.P1.rda
inst/extdata/wcEtOH/Et50/wDGDev-Et50_P3/17714.P1_BlvEt.jpg
inst/extdata/wcEtOH/Et50/wDGDev-Et50_P3/EtOH[50mM]-17714.P1/1-IV-1-Control.jpg
inst/extdata/wcEtOH/Et50/wDGDev-Et50_P3/EtOH[50mM]-17714.P1/17714.P1-NMDAgrd.jpg
inst/extdata/wcEtOH/Et50/wDGDev-Et50_P3/EtOH[50mM]-17714.P1/17714.P1-PPgrd.jpg
inst/extdata/wcEtOH/Et50/wDGDev-Et50_P3/EtOH[50mM]-17714.P1/2-IV-2-Control.jpg
inst/extdata/wcEtOH/Et50/wDGDev-Et50_P3/EtOH[50mM]-17714.P1/3-IO-3-Control.jpg
inst/rmarkdown/templates/mdGithub.Rmd man/APanalysis.Rd man/convertIndex.Rd man/dfs_ABF.Rd man/dvdt_mV.Rd man/editNphys.Rd man/epochDF_from_nwb_comments.Rd man/epochStimulus.Rd man/epochs_from_nwb_stimulus.Rd man/epochs_from_stimulus.Rd man/expDay.Rd man/extractNWB.Rd man/fileD.Rd man/fpks.Rd man/get_nwb_version.Rd man/groupify.Rd man/identify_points.Rd man/importABF.Rd man/isolateAPs.Rd man/isolateSegment.Rd man/ksmoothVec.Rd man/n_fun.Rd man/nwbPlot_sweep.Rd man/pZero.Rd man/pipe.Rd man/plotVoid.Rd man/plotVoidNWB.Rd man/reticABF.Rd man/rmFlag.Rd man/stimArtifact.Rd man/testPulse.Rd man/threshold_downsampling.Rd man/vmAvg.Rd man/write_exp_metadataNWB.Rd man/wrkD.Rd man/zeroAdjust.Rd
nphys.Rproj
py/heka_reader.py
py/heka_stimfit.py
py/reticPyABF.R
py/reticPyABF.py
rmd/LTD.Rmd
rmd/LTD.html
rmd/Observing_traces.Rmd rmd/Params.Rmd rmd/README.Rmd rmd/Scatterplots.Rmd rmd/archive/ObserveTraces.Rmd
rmd/archive/ObserveTraces.html
rmd/archive/VariousFunctions.Rmd
rmd/figs
rmd/importABF.Rmd
rmd/importABF.html
rmd/rdaFile.R rmd/rdaFile.Rmd
rmd/rdaFile.html
rmd/the_ABF_format.Rmd
setup_servers.py
setup_windows.bat
vignettes/.gitignore
vignettes/downsampling_signal.Rmd vignettes/nnest.Rmd
NRSC/nphys documentation built on Nov. 13, 2024, 2:12 a.m.

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