Bio | Biomass plots |
BioOptions | 'VulnB = TRUE' do the vulnerable biomass plot 'TotalB = TRUE'... |
Bio_posterior | Posterior biomass plots |
Catches | Catch plots |
cbPalette1 | The palette with grey |
cbPalette2 | The palette with black |
CDF_posterior | Cumulative density function plots of the posteriors of... |
CPUE | CPUE fit plots |
CPUEOptions | CPUEOptions |
CPUE_posterior | CPUE posterior plots |
CR | CR plots |
CROptions | CROptions |
crosscorrelation.plot | Cross correlation plot |
CR_posterior | Catch rate (CR) posterior plots |
cumulative.quantile | Calculate a cumulative quantile |
DDgrowth | DDgrowth plots |
Density_posterior | Density plots |
Erate | Exploitation rate plots |
LF | Length-frequency function |
LFOptions | LFOptions |
LFzero | LFzero |
Mature | Maturity |
Mature_posterior | Proportion maturing posterior |
MCMC.All | MCMC All |
MCMCOptions | MCMC options |
MeanSize | Mean size (tail width, mm) over time |
Merge_posterior | Merge posterior files and thin |
Merge_psv | Merge posterior files and thin |
mod | MOD function |
Moult | Size Increment per moult |
moving_average | Moving average |
MPD.All | MPD All |
MPE_rules | Plot control rules |
mpeview | MPE output viewer |
mpeview.bypar | Plot MPE diagnostic output against a single control rule... |
Multichain.All | MCMC multichain plots |
panel.cor | Panel Corr |
PeriodToFishingYear | PAB changed this |
PeriodToSeason | PAB revision |
PlotOptions | PlotOptions |
PlotType | Specify the type of plot you would like to create |
POO | POO plots |
POO_posterior | POO posterior plot |
PRI | PRIResids.out |
PRIOptions | PRIOptions |
QQpost | QQpost |
QQpostLFresid | MQQ post LF resid |
read.mpe.pars | Read harvest control rule pars in MPE control file |
read.psv | Read psv file |
read.sims.sum | Read Sims.sum output |
Rec_posterior | Posterior recruitment plots |
Rect | Recruitment plots |
rule_projection | Control rule projection |
RunningAvgShort | Running average function |
Select | Selectivity |
Select_posterior | Selectivity posterior |
sexRatio | Sex ratio fit plots |
SEXROptions | SEXROptions |
Snail | Snail trail plots |
SPBrect | Plot of surplus production versus biomass |
SP_posterior | Posterior surplus production plot |
SR_posterior | Sex ratio fit plots |
TACC | Calculate the TACC given a vector of CPUE |
Tag | Plot tag fits |
TagOptions | TagOptions |
theme_lobview | themes for ggplot2 graphics |
TraceHisto | Trace plots and histograms |
Trace_posterior | Trace plots |
Trajectories.All | Trajectories all |
Trajectories.Basic | Traj basic |
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