Man pages for NZRLIC/RLPlots
Graphical outputs for New Zealand rock lobster stock assessment

BioBiomass plots
BioOptions'VulnB = TRUE' do the vulnerable biomass plot 'TotalB = TRUE'...
Bio_posteriorPosterior biomass plots
CatchesCatch plots
cbPalette1The palette with grey
cbPalette2The palette with black
CDF_posteriorCumulative density function plots of the posteriors of...
CPUECPUE fit plots
CPUEOptionsCPUEOptions
CPUE_posteriorCPUE posterior plots
CRCR plots
CROptionsCROptions
crosscorrelation.plotCross correlation plot
CR_posteriorCatch rate (CR) posterior plots
cumulative.quantileCalculate a cumulative quantile
DDgrowthDDgrowth plots
Density_posteriorDensity plots
ErateExploitation rate plots
LFLength-frequency function
LFOptionsLFOptions
LFzeroLFzero
MatureMaturity
Mature_posteriorProportion maturing posterior
MCMC.AllMCMC All
MCMCOptionsMCMC options
MeanSizeMean size (tail width, mm) over time
Merge_posteriorMerge posterior files and thin
Merge_psvMerge posterior files and thin
modMOD function
MoultSize Increment per moult
moving_averageMoving average
MPD.AllMPD All
MPE_rulesPlot control rules
mpeviewMPE output viewer
mpeview.byparPlot MPE diagnostic output against a single control rule...
Multichain.AllMCMC multichain plots
panel.corPanel Corr
PeriodToFishingYearPAB changed this
PeriodToSeasonPAB revision
PlotOptionsPlotOptions
PlotTypeSpecify the type of plot you would like to create
POOPOO plots
POO_posteriorPOO posterior plot
PRIPRIResids.out
PRIOptionsPRIOptions
QQpostQQpost
QQpostLFresidMQQ post LF resid
read.mpe.parsRead harvest control rule pars in MPE control file
read.psvRead psv file
read.sims.sumRead Sims.sum output
Rec_posteriorPosterior recruitment plots
RectRecruitment plots
rule_projectionControl rule projection
RunningAvgShortRunning average function
SelectSelectivity
Select_posteriorSelectivity posterior
sexRatioSex ratio fit plots
SEXROptionsSEXROptions
SnailSnail trail plots
SPBrectPlot of surplus production versus biomass
SP_posteriorPosterior surplus production plot
SR_posteriorSex ratio fit plots
TACCCalculate the TACC given a vector of CPUE
TagPlot tag fits
TagOptionsTagOptions
theme_lobviewthemes for ggplot2 graphics
TraceHistoTrace plots and histograms
Trace_posteriorTrace plots
Trajectories.AllTrajectories all
Trajectories.BasicTraj basic
NZRLIC/RLPlots documentation built on May 9, 2017, 1:20 p.m.