Man pages for NZRLIC/RLPlots
Graphical outputs for New Zealand rock lobster stock assessment
| Bio | Biomass plots |
| BioOptions | 'VulnB = TRUE' do the vulnerable biomass plot 'TotalB = TRUE'... |
| Bio_posterior | Posterior biomass plots |
| Catches | Catch plots |
| cbPalette1 | The palette with grey |
| cbPalette2 | The palette with black |
| CDF_posterior | Cumulative density function plots of the posteriors of... |
| CPUE | CPUE fit plots |
| CPUEOptions | CPUEOptions |
| CPUE_posterior | CPUE posterior plots |
| CR | CR plots |
| CROptions | CROptions |
| crosscorrelation.plot | Cross correlation plot |
| CR_posterior | Catch rate (CR) posterior plots |
| cumulative.quantile | Calculate a cumulative quantile |
| DDgrowth | DDgrowth plots |
| Density_posterior | Density plots |
| Erate | Exploitation rate plots |
| LF | Length-frequency function |
| LFOptions | LFOptions |
| LFzero | LFzero |
| Mature | Maturity |
| Mature_posterior | Proportion maturing posterior |
| MCMC.All | MCMC All |
| MCMCOptions | MCMC options |
| MeanSize | Mean size (tail width, mm) over time |
| Merge_posterior | Merge posterior files and thin |
| Merge_psv | Merge posterior files and thin |
| mod | MOD function |
| Moult | Size Increment per moult |
| moving_average | Moving average |
| MPD.All | MPD All |
| MPE_rules | Plot control rules |
| mpeview | MPE output viewer |
| mpeview.bypar | Plot MPE diagnostic output against a single control rule... |
| Multichain.All | MCMC multichain plots |
| panel.cor | Panel Corr |
| PeriodToFishingYear | PAB changed this |
| PeriodToSeason | PAB revision |
| PlotOptions | PlotOptions |
| PlotType | Specify the type of plot you would like to create |
| POO | POO plots |
| POO_posterior | POO posterior plot |
| PRI | PRIResids.out |
| PRIOptions | PRIOptions |
| QQpost | QQpost |
| QQpostLFresid | MQQ post LF resid |
| read.mpe.pars | Read harvest control rule pars in MPE control file |
| read.psv | Read psv file |
| read.sims.sum | Read Sims.sum output |
| Rec_posterior | Posterior recruitment plots |
| Rect | Recruitment plots |
| rule_projection | Control rule projection |
| RunningAvgShort | Running average function |
| Select | Selectivity |
| Select_posterior | Selectivity posterior |
| sexRatio | Sex ratio fit plots |
| SEXROptions | SEXROptions |
| Snail | Snail trail plots |
| SPBrect | Plot of surplus production versus biomass |
| SP_posterior | Posterior surplus production plot |
| SR_posterior | Sex ratio fit plots |
| TACC | Calculate the TACC given a vector of CPUE |
| Tag | Plot tag fits |
| TagOptions | TagOptions |
| theme_lobview | themes for ggplot2 graphics |
| TraceHisto | Trace plots and histograms |
| Trace_posterior | Trace plots |
| Trajectories.All | Trajectories all |
| Trajectories.Basic | Traj basic |
