omicResults: Retrieves the simulated data.

In Neurergus/MOSim: Multi-Omics Simulation (MOSim)

Retrieves the simulated data.

Description

Retrieves the simulated data.

Usage

omicResults(simulation, omics = NULL, format = "data.frame")

Arguments

simulation	A MOSimulation object.
omics	List of the omics to retrieve the simulated data.
format	Type of object to use for returning the results

Value

A list containing an element for every omic specifiec, with the simulation data in the format indicated, or a numeric matrix with simulated data if the omic name is directly provided.

Examples

omic_list <- c("RNA-seq")
rnaseq_simulation <- mosim(omics = omic_list)
#' # This will be a data frame with RNA-seq counts
rnaseq_simulated <- omicResults(rnaseq_simulation, "RNA-seq")

#                    Group1.Time0.Rep1 Group1.Time0.Rep2 Group1.Time0.Rep3 ...
# ENSMUSG00000073155              4539              5374              5808 ...
# ENSMUSG00000026251                 0                 0                 0 ...
# ENSMUSG00000040472              2742              2714              2912 ...
# ENSMUSG00000021598              5256              4640              5130 ...
# ENSMUSG00000032348               421               348               492 ...
# ENSMUSG00000097226                16                14                 9 ...
# ENSMUSG00000027857                 0                 0                 0 ...
# ENSMUSG00000032081                 1                 0                 0 ...
# ENSMUSG00000097164               794               822               965 ...
# ENSMUSG00000097871                 0                 0                 0 ...

Neurergus/MOSim documentation built on Feb. 23, 2024, 8:29 a.m.