plotProfile: Generate a plot of a feature's profile for one or two omics.

In Neurergus/MOSim: Multi-Omics Simulation (MOSim)

Generate a plot of a feature's profile for one or two omics.

Description

Generate a plot of a feature's profile for one or two omics.

Usage

plotProfile(simulation, omics, featureIDS, drawReps = FALSE, groups = NULL)

Arguments

simulation	A MOSimulation object
omics	Character vector of the omics to simulate.
featureIDS	List containing the feature to show per omic. Must have the omics as the list names and the features as values.
drawReps	Logical to enable/disable the representation of the replicates inside the plot.
groups	Character vector indicating the groups to plot in the form "GroupX" (i.e. Group1)

Value

A ggplot2 object.

Examples

omic_list <- c("RNA-seq", "miRNA-seq")

rnaseq_options <- c(omicSim("miRNA-seq", totalFeatures = 2500))
rnaseq_simulation <- mosim(omics = omic_list,
                           omicsOptions = rnaseq_options)

plotProfile(rnaseq_simulation,
    omics = c("RNA-seq", "miRNA-seq"),
    featureIDS = list("RNA-seq"="ENSMUSG00000007682", "miRNA-seq"="mmu-miR-320-3p")
)

Neurergus/MOSim documentation built on Feb. 23, 2024, 8:29 a.m.