count_snps_in_bins: Get how many SNPs variation fall within each bin in the...
In Ni-Ar/niar: Nice Interactive Analysis with R

count_snps_in_bins

R Documentation

Get how many SNPs variation fall within each bin in the different regions of the bed file.

Description

Get how many SNPs variation fall within each bin in the different regions of the bed file.

Usage

count_snps_in_bins(
  df,
  snp_ID_col = "RefSNP_ID",
  left_slop,
  right_slop,
  left_bins_num = 50,
  centre_bins_num = 50,
  right_bins_num = 25,
  start_centre_len = 39,
  end_centre_len = 39,
  check_bins = T
)

Arguments

`df`
`snp_ID_col`
`left_slop`
`right_slop`
`left_bins_num`
`centre_bins_num`	number of bins to divide the centre region (before slopping).
`right_bins_num`
`start_centre_len`	Do not bin all centre region at once. Just consider the first N part of the centre region.
`end_centre_len`	Just consider the last N part of the centre region.
`check_bins`