get_hPTM_FC: Calculate summary stats across all samples for each hPTM and...

In Ni-Ar/niar: Nice Interactive Analysis with R

Calculate summary stats across all samples for each hPTM and calculate hPTM are log2 Fold Change relative to control sample

Description

Calculate summary stats across all samples for each hPTM and calculate hPTM are log2 Fold Change relative to control sample

Usage

get_hPTM_FC(data, Pseudocount = 1, Reference_Sample_Name)

Arguments

data	Tibble imported with read_EpiProfile_histone_ratio().
Pseudocount	Number. By default adds 1 pseudo count to the Area values to avoid diving by zero.
Reference_Sample_Name	name of the reference sample to be used for area log2 FC (e.g. WT/untreated condition)

Value

A tibble

Examples

read_EpiProfile_histone_ratio("path/to/histone_ratio.xls") |>
    tidy_hPTMs() |>
    get_hPTM_FC(Reference_Sample_Name = 'WT_1_DIA')

Ni-Ar/niar documentation built on Feb. 3, 2025, 9:25 a.m.