df2JSD: Calculate Jensen-Shannon divergence (JSD) between 2 set of...
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df2JSD R Documentation
Calculate Jensen-Shannon divergence (JSD) between 2 set of sequences.
Description
Letters in the alphabet that are less abundant in df2 sequences relative to df1 sequences have positive values.
More abundant letters in df2 sequences relative to df1 have nevative values.
Usage
df2JSD(df1, df2, ID_col, alphabet, long_format = FALSE)
Arguments
df1
df2
ID_col
alphabet
A character vector containing the alphabet letters present in Sequence. Guessed by default.
Value
A data.frame or a tidy long formatted data.frame
Examples
df2JSD(df1 = data_p, df2 = data_q, ID_col, long_format = F)
Ni-Ar/niar documentation built on Feb. 3, 2025, 9:25 a.m.
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| df2JSD | R Documentation |
Calculate Jensen-Shannon divergence (JSD) between 2 set of sequences.
Description
Letters in the alphabet that are less abundant in df2 sequences relative to df1 sequences have positive values.
More abundant letters in df2 sequences relative to df1 have nevative values.
Usage
df2JSD(df1, df2, ID_col, alphabet, long_format = FALSE)
Arguments
df1 |
|
df2 |
|
ID_col |
|
alphabet |
A character vector containing the alphabet letters present in |
Value
A data.frame or a tidy long formatted data.frame
Examples
df2JSD(df1 = data_p, df2 = data_q, ID_col, long_format = F)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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