Files in NiklasTR/dcp_helper
Create metadata and job files for distributed cell profiler
.DS_Store
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/add_brightfield_proj.R
R/add_flourescent_proj.R
R/build_filelist.R
R/check_image_set.R
R/collect_feature_data.R
R/collect_feature_data_db.R
R/create_flatfield_metadata.R
R/create_flatfield_metadata_split.R
R/create_phase_metadata.R
R/dump_database.R
R/extract_filelist.R
R/generate_group.R
R/group_jobs_bash.R
R/group_metadata_bash.R
R/link_data_file.R
R/link_json_metadata.R
R/reformat_filelist.R
R/write_metadata.R
R/write_metadata_split.R
R/write_split_with_name.R
README.md
aggregate_data.R
data/.DS_Store
data/dpc_segmentation/.DS_Store
data/dpc_segmentation/r04c09f02p07-ch2sk1fk1fl1_flatfield.png
data/dpc_segmentation/r04c09f02p16-ch2sk1fk1fl1_projection_variance.png
data/job_flatflield_template.json
dcphelper.Rproj
generate_metadata.R
generate_metadata_archive/generate_metadata_12048703.R
generate_metadata_archive/generate_metadata_7803_ch5.R
generate_metadata_archive/generate_metadata_8903.R
generate_metadata_archive/generate_metadata_8903_M4.R
generate_metadata_archive/generate_metadata_9003.R
generate_metadata_archive/generate_metadata_9003_M4.R
generate_metadata_archive/generate_metadata_CCLF_cRCRF1050T.R
generate_metadata_archive/generate_metadata_test.R
generate_metadata_archive/generate_metadata_test.R~
generate_metadata_archive/sync_to_bucket.sh
generate_metadata_archive/tmp.sh
glacier_helper/glacier_identify
glacier_helper/glacier_recover
group_template.txt
man/add_brightfield_proj.Rd
man/add_flourescent_proj.Rd
man/build_filelist.Rd
man/check_image_set.Rd
man/collect_feature_data.Rd
man/collect_feature_data_db.Rd
man/create_flatfield_metadata.Rd
man/create_flatfield_metadata_split.Rd
man/create_phase_metadata.Rd
man/dump_database.Rd
man/extract_filelist.Rd
man/generate_group.Rd
man/group_jobs_bash.Rd
man/group_metadata_bash.Rd
man/link_data_file.Rd
man/link_json_metadata.Rd
man/reformat_filelist.Rd
man/write_metadata.Rd
man/write_metadata_split.Rd
processed_wells.txt
python/ManualMetadata.py
python/ManualMetadata_dir.py
python/dir_content_example.txt
python/group_metadata_split_path.sh
python/job_flatfield_template.json
python/job_maxproj_template.json
python/job_segmentation_template.json
python/metadata_000012045003__2018-09-28T20_42_19-Measurement_5_bf.csv
python/metadata_bf_toy.csv
python/metadata_bf_truncated.csv
python/metadata_bf_truncatedbatch.txt
sync_data_from_bucket.sh
sync_metadata_from_bucket.sh
sync_metadata_to_bucket.sh
tmp.sh
vignettes/connect_database.Rmd
vignettes/connect_database.nb.html
vignettes/developing_DPC_segmentation.Rmd
vignettes/imaging_inventory.Rmd
vignettes/installing_on_aws.Rmd
vignettes/preprocessing_000012048903.Rmd
vignettes/preprocessing_000012049003.Rmd
vignettes/preprocessing_000012056303.Rmd
vignettes/preprocessing_000012070903.Rmd
vignettes/preprocessing_000012077803.Rmd
