customDict: Generate dict of cluster names

In Nina-Song/stJoincount: stJoincount - Join count statistic for quantifying spatial correlation between clusters

Generate dict of cluster names

Description

Create a dictionary with categorical cluster labels as values and their converted numerical labels as keys

Usage

customDict(sampleInfo)

Arguments

sampleInfo

A data.frame contains the pixel information and cluster labels for each barcode of a human breast cancer sample. The index contains barcodes, and at least three other columns that have these information are required and the column names should be the same as following: "imagerow": The row pixel coordinate of the center of the spot "imagecol": The column pixel coordinate of the center of the spot "Cluster": The label that corresponding to this barcode

Value

A dictionary with categorical cluster labels as values and their converted numerical labels as keys.

Examples

fpath <- system.file("extdata", "dataframe.rda", package="stJoincount")
load(fpath)
nameList <- customDict(humanBC)

Nina-Song/stJoincount documentation built on Oct. 23, 2022, 4:55 p.m.