mosaicIntPlot: Mosaic plot
In Nina-Song/stJoincount: stJoincount - Join count statistic for quantifying spatial correlation between clusters
View source: R/rasterization.R
mosaicIntPlot R Documentation
Mosaic plot
Description
Visualization of the rasterization results and label coding of the sample.
Usage
mosaicIntPlot(sampleInfo, mosaicIntegration)
Arguments
sampleInfo
A dataset of a human breast cancer sample containing the
pixel information and cluster labels for each barcode.
mosaicIntegration
A raster object converted from a labeled spatial tissue map.
Value
A mosaic plot with labeled pixels.
Examples
fpath <- system.file("extdata", "dataframe.rda", package="stJoincount")
load(fpath)
mosaicIntegration <- rasterizeEachCluster(humanBC)
mosaicIntPlot(humanBC, mosaicIntegration)
Nina-Song/stJoincount documentation built on Oct. 23, 2022, 4:55 p.m.
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View source: R/rasterization.R
| mosaicIntPlot | R Documentation |
Mosaic plot
Description
Visualization of the rasterization results and label coding of the sample.
Usage
mosaicIntPlot(sampleInfo, mosaicIntegration)
Arguments
sampleInfo |
A dataset of a human breast cancer sample containing the pixel information and cluster labels for each barcode. |
mosaicIntegration |
A raster object converted from a labeled spatial tissue map. |
Value
A mosaic plot with labeled pixels.
Examples
fpath <- system.file("extdata", "dataframe.rda", package="stJoincount")
load(fpath)
mosaicIntegration <- rasterizeEachCluster(humanBC)
mosaicIntPlot(humanBC, mosaicIntegration)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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