control_trip: Control trip

In OB7-IRD/fishi: Package Fisheries Indicators

Control trip

Description

Trip data consistency control

Usage

control_trip(
  dataframe_observe,
  dataframe_logbook,
  reported_year,
  flag_selected,
  table = "vessel_set",
  ocean = "Atlantic",
  path_to_csv = NULL
)

Arguments

dataframe_observe	data.frame expected. Dataframe from the Observe database. Csv or output of the function data_extraction, which must be done before using the control_trip() function.
dataframe_logbook	data.frame expected. Dataframe from the logbook database. Csv or output of the function data_extraction, which must be done before using the control_trip() function.
reported_year	integer expected. Year of the report.
flag_selected	character expected. Flag of the country; isocode.
table	character expected. code_case, controltrip or vessel_set. vessel_set by default.
ocean	character expected. Atlantic or Indian. Atlantic by default.
path_to_csv	character expected. Path to save the csv file. NULL by default.

Details

The input dataframe must contain all these columns for the function to work [see referentials]: Dataframe observe:

   program          | vessel_code |  trip_end_date | observation_date | observation_time | ocean_label  | trip_id                            | flag | set_id
   -----------------------------------------------------------------------------------------------------------------------------------------------------------------------
   DCF Senne (IRD)  | 887         |  2022-05-03    | 2022-04-13       | 14:45:00         | Indian | fr.ird.data.ps.common.Trip#164984  | FRA  | fr.ird.data.ps.observation.Set
   DCF Senne (IRD)  | 887         |  2022-05-03    | 2022-04-13       | 02:15:00         | Indian | fr.ird.data.ps.common.Trip#164984  | FRA  |
   DCF Senne (IRD)  | 887         |  2022-05-03    | 2022-04-13       | 10:18:00         | Indian | fr.ird.data.ps.common.Trip#164984  | FRA  |

Dataframe logbook:

   vessel_code    | ocean_label  | flag  | school_type | trip_id                        | vessel_activity_code | activity_id                          | departure_date | landing_date
   ------------------------------------------------------------------------------------------------------------------------------------------------------------------------
   AVEL VAD       | Indian | FRA   | FOB         | fr.ird.data.ps.common.Trip#17  |  6                   | fr.ird.data.ps.logbook.Activity#170  | 2021-12-18     | 2022-01-26
   AVEL VAD       | Indian | FRA   | NA          | fr.ird.data.ps.common.Trip#18  | 13                   | fr.ird.data.ps.logbook.Activity#171  | 2021-12-18     | 2022-01-26
   AVEL VAD       | Indian | FRA   | FSC         | fr.ird.data.ps.common.Trip#19  | 13                   | fr.ird.data.ps.logbook.Activity#172  | 2021-12-18     | 2022-01-26

Value

The function return ggplot R plot.

OB7-IRD/fishi documentation built on Feb. 4, 2025, 2:03 a.m.