getPatientDataCases: This function fetches all the patient data (non-generic)...

In OHDSI/Aphrodite: Automated PHenotype Routine for Observational Definition Identification Training and Evaluation (APHRODITE) - Phenotype building tool using Fuzzy labels

Description

This function fetches all the patient data (non-generic) designed to work when building a model. Returns raw patient data.

Usage

getPatientDataCases(connection, dbms, patient_ids, keywords, ignores,
  flags, schema, removeDomains = "", searchDomain)

Arguments

connection	The connection to the database server.
dbms	The target DBMS for SQL to be rendered in.
patient_ids	The list of case patient id's to extract data from.
keywords	The list of concept_id's used to build the cohort.
ignores	The list of concept_id's ignored when building the cohort.
flags	The R dataframe that contains all feature/model flags specified in settings.R.
schema	The database schema being used.
removeDomains=”	List of domains to not include as features, if any are specified in settings file

Details

Based on the groups of feature sets determined in the flags variable, this function will fetch patient data. The function determines the first mention of the keywords and selects that date to start the data extraction of the remaining patient information

Value

An object containing the raw feature sets for the patient data.

Examples

## Not run: 

 dataFcases <-getPatientDataCases(conn, dbms, cases, as.character(keywordList_FF$V3),
         flag , cdmSchema)


## End(Not run)

OHDSI/Aphrodite documentation built on Sept. 18, 2020, 10:26 p.m.