# @file PackageMaintenance
#
# Copyright 2022 Observational Health Data Sciences and Informatics
#
# This file is part of IcTemporalPatternDiscovery
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
# Format and check code
styler::style_pkg()
OhdsiRTools::checkUsagePackage("IcTemporalPatternDiscovery")
OhdsiRTools::updateCopyrightYearFolder()
# Create manual
shell("rm extras/IcTemporalPatternDiscovery.pdf")
shell("R CMD Rd2pdf ./ --output=extras/IcTemporalPatternDiscovery.pdf")
pkgdown::build_site()
# Create args functions
rCode <- c("# This file has been autogenerated. Do not change by hand. ")
rCode <- ParallelLogger::createArgFunction("getDbIctpdData",
excludeArgs = c("connectionDetails",
"cdmDatabaseSchema",
"oracleTempSchema",
'tempEmulationSchema',
"exposureDatabaseSchema",
"exposureTable",
"outcomeDatabaseSchema",
"outcomeTable",
"cdmVersion",
"exposureOutcomePairs"),
rCode = rCode)
rCode <- ParallelLogger::createArgFunction("calculateStatisticsIc",
excludeArgs = c("ictpdData"),
rCode = rCode)
writeLines(rCode, "r/CreateArgFunctions.R")
OhdsiRTools::formatRFile("r/CreateArgFunctions.R")
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