In OHDSI/PatientLevelPrediction: Developing patient level prediction using data in the OMOP Common Data Model
{=html}
<!--
%\VignetteEngine{knitr::knitr}
%\VignetteIndexEntry{Best Practices}
-->
Best practice publications using the OHDSI PatientLevelPrediction framework
+-----------------------+--------------------------------------------------------------------------------------------------------------------------------------+---------------------------------------------------------------------------------------------------------------------+
| Topic | Research Summary | Link |
+=======================+======================================================================================================================================+=====================================================================================================================+
| Problem Specification | When is prediction suitable in observational data? | Guidelines needed |
+-----------------------+--------------------------------------------------------------------------------------------------------------------------------------+---------------------------------------------------------------------------------------------------------------------+
| Data Creation | Comparison of cohort vs case-control design | Journal of Big Data |
+-----------------------+--------------------------------------------------------------------------------------------------------------------------------------+---------------------------------------------------------------------------------------------------------------------+
| Data Creation | Addressing loss to follow-up (right censoring) | BMC medical informatics and decision makingk |
+-----------------------+--------------------------------------------------------------------------------------------------------------------------------------+---------------------------------------------------------------------------------------------------------------------+
| Data Creation | Investigating how to address left censoring in features construction | BMC Medical Research Methodology |
+-----------------------+--------------------------------------------------------------------------------------------------------------------------------------+---------------------------------------------------------------------------------------------------------------------+
| Data Creation | Impact of over/under-sampling | Paper under review |
+-----------------------+--------------------------------------------------------------------------------------------------------------------------------------+---------------------------------------------------------------------------------------------------------------------+
| Data Creation | Impact of phenotypes | Study Done - Paper submitted |
+-----------------------+--------------------------------------------------------------------------------------------------------------------------------------+---------------------------------------------------------------------------------------------------------------------+
| Model development | How much data do we need for prediction - Learning curves at scale | International Journal of Medical Informatics |
+-----------------------+--------------------------------------------------------------------------------------------------------------------------------------+---------------------------------------------------------------------------------------------------------------------+
| Model development | What impact does test/train/validation design have on model performance | BMJ Open |
+-----------------------+--------------------------------------------------------------------------------------------------------------------------------------+---------------------------------------------------------------------------------------------------------------------+
| Model development | What is the impact of the classifier | JAMIA |
+-----------------------+--------------------------------------------------------------------------------------------------------------------------------------+---------------------------------------------------------------------------------------------------------------------+
| Model development | Can we find hyper-parameter combinations per classifier that consistently lead to good performing models when using claims/EHR data? | Study needs to be done |
+-----------------------+--------------------------------------------------------------------------------------------------------------------------------------+---------------------------------------------------------------------------------------------------------------------+
| Model development | Can we use ensembles to combine different algorithm models within a database to improve models transportability? | Study Complete |
+-----------------------+--------------------------------------------------------------------------------------------------------------------------------------+---------------------------------------------------------------------------------------------------------------------+
| Model development | Can we use ensembles to combine models developed using different databases to improve models transportability? | BMC Medical Informatics and Decision Making |
+-----------------------+--------------------------------------------------------------------------------------------------------------------------------------+---------------------------------------------------------------------------------------------------------------------+
| Evaluation | How should we present model performance? (e.g., new visualizations) | JAMIA Open |
+-----------------------+--------------------------------------------------------------------------------------------------------------------------------------+---------------------------------------------------------------------------------------------------------------------+
| Evaluation | How to interpret external validation performance (can we figure out why the performance drops or stays consistent)? | Study needs to be done |
+-----------------------+--------------------------------------------------------------------------------------------------------------------------------------+---------------------------------------------------------------------------------------------------------------------+
| Evaluation | Recalibration methods | Study needs to be done |
+-----------------------+--------------------------------------------------------------------------------------------------------------------------------------+---------------------------------------------------------------------------------------------------------------------+
| Evaluation | Is there a way to automatically simplify models? | Study protocol under development |
+-----------------------+--------------------------------------------------------------------------------------------------------------------------------------+---------------------------------------------------------------------------------------------------------------------+
OHDSI/PatientLevelPrediction documentation built on May 3, 2024, 12:11 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
{=html}
<!--
%\VignetteEngine{knitr::knitr}
%\VignetteIndexEntry{Best Practices}
-->
Best practice publications using the OHDSI PatientLevelPrediction framework
+-----------------------+--------------------------------------------------------------------------------------------------------------------------------------+---------------------------------------------------------------------------------------------------------------------+ | Topic | Research Summary | Link | +=======================+======================================================================================================================================+=====================================================================================================================+ | Problem Specification | When is prediction suitable in observational data? | Guidelines needed | +-----------------------+--------------------------------------------------------------------------------------------------------------------------------------+---------------------------------------------------------------------------------------------------------------------+ | Data Creation | Comparison of cohort vs case-control design | Journal of Big Data | +-----------------------+--------------------------------------------------------------------------------------------------------------------------------------+---------------------------------------------------------------------------------------------------------------------+ | Data Creation | Addressing loss to follow-up (right censoring) | BMC medical informatics and decision makingk | +-----------------------+--------------------------------------------------------------------------------------------------------------------------------------+---------------------------------------------------------------------------------------------------------------------+ | Data Creation | Investigating how to address left censoring in features construction | BMC Medical Research Methodology | +-----------------------+--------------------------------------------------------------------------------------------------------------------------------------+---------------------------------------------------------------------------------------------------------------------+ | Data Creation | Impact of over/under-sampling | Paper under review | +-----------------------+--------------------------------------------------------------------------------------------------------------------------------------+---------------------------------------------------------------------------------------------------------------------+ | Data Creation | Impact of phenotypes | Study Done - Paper submitted | +-----------------------+--------------------------------------------------------------------------------------------------------------------------------------+---------------------------------------------------------------------------------------------------------------------+ | Model development | How much data do we need for prediction - Learning curves at scale | International Journal of Medical Informatics | +-----------------------+--------------------------------------------------------------------------------------------------------------------------------------+---------------------------------------------------------------------------------------------------------------------+ | Model development | What impact does test/train/validation design have on model performance | BMJ Open | +-----------------------+--------------------------------------------------------------------------------------------------------------------------------------+---------------------------------------------------------------------------------------------------------------------+ | Model development | What is the impact of the classifier | JAMIA | +-----------------------+--------------------------------------------------------------------------------------------------------------------------------------+---------------------------------------------------------------------------------------------------------------------+ | Model development | Can we find hyper-parameter combinations per classifier that consistently lead to good performing models when using claims/EHR data? | Study needs to be done | +-----------------------+--------------------------------------------------------------------------------------------------------------------------------------+---------------------------------------------------------------------------------------------------------------------+ | Model development | Can we use ensembles to combine different algorithm models within a database to improve models transportability? | Study Complete | +-----------------------+--------------------------------------------------------------------------------------------------------------------------------------+---------------------------------------------------------------------------------------------------------------------+ | Model development | Can we use ensembles to combine models developed using different databases to improve models transportability? | BMC Medical Informatics and Decision Making | +-----------------------+--------------------------------------------------------------------------------------------------------------------------------------+---------------------------------------------------------------------------------------------------------------------+ | Evaluation | How should we present model performance? (e.g., new visualizations) | JAMIA Open | +-----------------------+--------------------------------------------------------------------------------------------------------------------------------------+---------------------------------------------------------------------------------------------------------------------+ | Evaluation | How to interpret external validation performance (can we figure out why the performance drops or stays consistent)? | Study needs to be done | +-----------------------+--------------------------------------------------------------------------------------------------------------------------------------+---------------------------------------------------------------------------------------------------------------------+ | Evaluation | Recalibration methods | Study needs to be done | +-----------------------+--------------------------------------------------------------------------------------------------------------------------------------+---------------------------------------------------------------------------------------------------------------------+ | Evaluation | Is there a way to automatically simplify models? | Study protocol under development | +-----------------------+--------------------------------------------------------------------------------------------------------------------------------------+---------------------------------------------------------------------------------------------------------------------+
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.