Man pages for OJWatson/paper
Demonstration of analysis associated to "paper outbreak" teaching practical
| animate_infection_network | Creates interactive html file with d3 network animation |
| bootstrap_simulated_plot | Bootstrap and plot simulated epidemic |
| combined_plot | Plot multiplot of network at 24 hour intervals with the... |
| daily_timeseries_plot | Plot 5x1 multiplot of network at 24 hour intervals |
| discrete_SIR_simulator | Discrete in time SIR simulator |
| epidemic_timeseries_plot | Plot epidemic time series |
| first_infection_list | Format read outbreak dataset into first infections |
| generation_time_daily_plot | Plot Daily Generation Time |
| infection_network_plot | Plots infection network |
| offspring_distribution_plot | Plot offspring distribution |
| outbreak_dataset_read | Read in and remove sensitive data |
| paper.outbreak.2016 | Paper outbreak practical data |
| paramater_boxplots_plot | Plot 4x1 boxplots of epidemiological parameters |
