animate_infection_network | Creates interactive html file with d3 network animation |
bootstrap_simulated_plot | Bootstrap and plot simulated epidemic |
combined_plot | Plot multiplot of network at 24 hour intervals with the... |
daily_timeseries_plot | Plot 5x1 multiplot of network at 24 hour intervals |
discrete_SIR_simulator | Discrete in time SIR simulator |
epidemic_timeseries_plot | Plot epidemic time series |
first_infection_list | Format read outbreak dataset into first infections |
generation_time_daily_plot | Plot Daily Generation Time |
infection_network_plot | Plots infection network |
offspring_distribution_plot | Plot offspring distribution |
outbreak_dataset_read | Read in and remove sensitive data |
paper.outbreak.2016 | Paper outbreak practical data |
paramater_boxplots_plot | Plot 4x1 boxplots of epidemiological parameters |
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