Demonstration of analysis associated to "paper outbreak" teaching practical

animate_infection_network | Creates interactive html file with d3 network animation |

bootstrap_simulated_plot | Bootstrap and plot simulated epidemic |

combined_plot | Plot multiplot of network at 24 hour intervals with the... |

daily_timeseries_plot | Plot 5x1 multiplot of network at 24 hour intervals |

discrete_SIR_simulator | Discrete in time SIR simulator |

epidemic_timeseries_plot | Plot epidemic time series |

first_infection_list | Format read outbreak dataset into first infections |

generation_time_daily_plot | Plot Daily Generation Time |

infection_network_plot | Plots infection network |

offspring_distribution_plot | Plot offspring distribution |

outbreak_dataset_read | Read in and remove sensitive data |

paper.outbreak.2016 | Paper outbreak practical data |

paramater_boxplots_plot | Plot 4x1 boxplots of epidemiological parameters |

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