txomeai-package: API access to Ocean Genomics txome.ai RNA-seq Analysis
In OceanGenomics/txomeai: API access to Ocean Genomics txome.ai RNA-seq Analysis

Description Details Author(s) References Examples

This package is a wrapper for the API interface to txome.ai RNA-seq Analysis reports. It handles authentication and query munging for simplified data access. This is the API to access report data generated by the txome.ai tool from Ocean Genomics.

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~~ An overview of how to use the package, including the most important ~~ ~~ functions ~~

Joshua Katz [aut], Guillaume Marçais [cre, cph] Maintainer: Guillaume Marçais <gmarcais@oceangenomics.com>

https://txomeai.oceangenomics.com/

domain = "https://txomeai.oceangenomics.com"
path = "api/pipeline-output/c444dfda-de51-4053-8cb7-881dd1b2734d/2021-10-25T185916/report/index.html"
report = txomeai_connect(paste(domain, path, sep="/"))
# View all available tables
unique(report$ls$name)
# View available queries
head(report$ls)
# View sample meta data
head(report$sample_meta)
# View comparative analysis meta data
head(report$comparative_meta)
# Run a table query
report_sv = txomeai_get(report, "StructuralVariants")