txomeai_get: Get data from the Txome.AI anaylsis report.

In OceanGenomics/txomeai: API access to Ocean Genomics txome.ai RNA-seq Analysis

Description

Get data from the Txome.AI anaylsis report.

Usage

txomeai_get(connection, tableName, tableKey = NULL)

Arguments

connection	The connection object returned from txomeai_connect.
tableName	A name column value from the ls table (see txomeai_connect ls table).
tableKey	An optional key value from the ls table (see txomeai_connect ls table).

Value

A data.table with all results.

Examples

dontrun
domain <- "https://txomeai.oceangenomics.com"
path <- paste0("api/pipeline-output/c444dfda-de51-4053-8cb7-881dd1b2734d/",
   "2021-10-25T185916/report/index.html")
report <- txomeai_connect(paste(domain, path, sep="/"))
report_fastp <- txomeai_get(report, "FastpJSON")

OceanGenomics/txomeai documentation built on Feb. 19, 2022, 1:46 p.m.