R/synth-data.R

In OceanGenomics/txomeai: API access to Ocean Genomics txome.ai RNA-seq Analysis

#' Synthetic RNA-Seq data run on the Ocean Genomics platform
#'
#' Synthetic RNA-seq data run against the Human Ensemble v101 database.
#'
#' @docType data
#'
#' @keywords datasets
#'
#' @source \href{https://txomeai.oceangenomics.com/}{Ocean Genomics}
#'
#' @examples
#' data(synthetic_data_report)
#' head(synthetic_data_report$ls)
"synthetic_data_report"

#' Results from the Ocean Genomics Contamintaion Analysis
#'
#' @docType data
#'
#' @keywords datasets
#'
#' @source \href{https://txomeai.oceangenomics.com/}{Ocean Genomics}
#'
#' @examples
#' data(ContaminationSummary)
#' head(ContaminationSummary)
"ContaminationSummary"

#' Results from the Ocean Genomics Differential Gene Expression analysis.
#'
#' @docType data
#'
#' @keywords datasets
#'
#' @source \href{https://txomeai.oceangenomics.com/}{Ocean Genomics}
#'
#' @examples
#' data(DifferentialGeneExpression)
#' head(DifferentialGeneExpression)
"DifferentialGeneExpression"

#' Results from the Ocean Genomics High Variance Gene analysis.
#'
#' @docType data
#'
#' @keywords datasets
#'
#' @source \href{https://txomeai.oceangenomics.com/}{Ocean Genomics}
#'
#' @examples
#' data(HighVarianceGenes)
#' head(HighVarianceGenes)
"HighVarianceGenes"

#' Results from the Ocean Genomics Spearman Correlation analysis.
#'
#' @docType data
#'
#' @keywords datasets
#'
#' @source \href{https://txomeai.oceangenomics.com/}{Ocean Genomics}
#'
#' @examples
#' data(SpearmanCorrelation)
#' head(SpearmanCorrelation)
"SpearmanCorrelation"

#' Results from the Ocean Genomics Transcript Integrity analysis.
#'
#' @docType data
#'
#' @keywords datasets
#'
#' @source \href{https://txomeai.oceangenomics.com/}{Ocean Genomics}
#'
#' @examples
#' data(TranscriptIntegrityStats)
#' head(TranscriptIntegrityStats)
"TranscriptIntegrityStats"