DefaultPlotConfiguration: Plot configuration for OSP plots
In Open-Systems-Pharmacology/OSPSuite-R: R package to manipulate OSPSuite Models
DefaultPlotConfiguration R Documentation
Plot configuration for OSP plots
Description
R6 configuration class defining aesthetic properties of plots that can be
created with plotIndividualTimeProfile(), plotPopulationTimeProfile(),
plotObservedVsSimulated(), and plotResidualsVsTime().
To interactively explore various aesthetic properties and appearance of plots
with these properties, you can use the Shiny app from {tlf} package.
The following sections provide more details on how to customize it further.
Specifying aesthetic properties
Aesthetic mappings describe how groups are mapped to visual properties
(color, shape, size, etc.) of the geometries included in the plot (e.g.
point, line, ribbon, etc.).
The supported values for each property can be seen using {tlf} lists:
color, fill: tlf::ColorMaps
shape: tlf::Shapes
legend position: tlf::LegendPositions
alignments: tlf::Alignments
linetype: tlf::Linetypes
For example, all parameters related to color (titleColor,
yAxisLabelTicksColor, etc.) accept any of the palettes available in
tlf::ColorMaps (e.g. tlf::ColorMaps$ospDefault).
Note that these are named lists, and, therefore, if you want to assign a
specific element from a list to an object's public field, you will have to
extract that element first.
For example, if you want to specify that the
legend position should be outside the plot to the left and at bottom, you
will have to do the following:
myPlotConfiguration <- DefaultPlotConfiguration$new()
myPlotConfiguration$legendPosition <- tlf::LegendPositions$outsideBottomLeft
Of course, the extracted element doesn't have to be a single value, and can
also be an atomic vector. For example, if you want to assign a different line
type to each group in a profile plot, you will have to assign a vector of
line types.
myPlotConfiguration <- DefaultPlotConfiguration$new()
myPlotConfiguration$linesLinetype <- names(tlf::Linetypes)
If there are more number of elements in the vector than the number of groups,
the additional elements will be ignored.
Specifying units
The available units for x-and y-axes depend on the dimensions of these
quantities (ospsuite::ospDimensions). Supported units can be seen with
ospsuite::ospUnits.
Specifying fonts
A font is a particular set of glyphs (character shapes), differentiated from
other fonts in the same family by additional properties such as stroke
weight, slant, relative width, etc.
A font face (aka typeface) is the design of lettering, characterized by
variations in size, weight (e.g. bold), slope (e.g. italic), width (e.g.
condensed), and so on. The available font faces can seen using
tlf::FontFaces list.
A font family is a grouping of fonts defined by shared design styles.
The available font families will depend on which fonts have been installed on
your computer. This information can be extracted by running the following
code:
# install.packages("systemfonts")
library(systemfonts)
system_fonts()
Specifying scaling
Transformations for both x- and y-axes can be (independently) specified. The
default is linear for both axes.
The available transformations can be seen in the tlf::Scaling list.
Specifying tick labels
tlf::TickLabelTransforms lists of all available tick label transformations.
For example, selecting tlf::TickLabelTransforms$identity will display tick
labels as they are, while selecting tlf::TickLabelTransforms$log will
display tick labels in logarithmic scale format.
Saving plot
By default, the plots will be shown in plot pane of your IDE, but the plots
can also be saved to a file using the ggplot2::ggsave() function.
myPlot <- plotIndividualTimeProfile(myDataComb, myPC)
ggplot2::ggsave(filename = "plot_1.png", plot = myPlot)
Public fields
xUnit, yUnitUnits for quantities plotted on x- and y-axes, respectively.
title, subtitle, caption, xLabel, yLabel, legendTitle, watermarkA character
string providing plot annotations for plot title, subtitle, caption, x-axis
label, y-axis label, plot legend, watermark, respectively.
titleColor, titleSize, titleFontFace, titleFontFamily, titleAngle, titleAlign, titleMarginAesthetic properties for the plot title.
subtitleColor, subtitleSize, subtitleFontFace, subtitleFontFamily, subtitleAngle, subtitleAlign, subtitleMarginAesthetic properties for the plot subtitle.
captionColor, captionSize, captionFontFace, captionFontFamily, captionAngle, captionAlign, captionMarginAesthetic properties for the plot caption.
xLabelColor, xLabelSize, xLabelFontFace, xLabelFontFamily, xLabelAngle, xLabelAlign, xLabelMarginAesthetic properties for the plot xLabel.
yLabelColor, yLabelSize, yLabelFontFace, yLabelFontFamily, yLabelAngle, yLabelAlign, yLabelMarginAesthetic properties for the plot yLabel.
legendPositionA character string defining the legend position.
Available options can be seen using tlf::LegendPositions list.
legendTitleSize, legendTitleColor, legendTitleFontFamily, legendTitleFontFace, legendTitleAngle, legendTitleAlign, legendTitleMarginAesthetic properties for the legend title.
legendKeysSize, legendKeysColor, legendKeysFontFamily, legendKeysFontFace, legendKeysAngle, legendKeysAlign, legendKeysMarginAesthetic properties for the legend caption.
legendBackgroundColor, legendBackgroundAlpha, legendBorderColor, legendBorderType, legendBorderSizeAesthetic properties for the legend box
xAxisTicksLabels, xAxisLabelTicksSize, xAxisLabelTicksColor, xAxisLabelTicksFontFamily, xAxisLabelTicksFontFace, xAxisLabelTicksAngle, xAxisLabelTicksAlign, xAxisLabelTicksMargin, xAxisExpandAesthetic properties for the x-axis label.
yAxisTicksLabels, yAxisLabelTicksSize, yAxisLabelTicksColor, yAxisLabelTicksFontFamily, yAxisLabelTicksFontFace, yAxisLabelTicksAngle, yAxisLabelTicksAlign, yAxisLabelTicksMargin, yAxisExpandAesthetic properties for the y-axis label.
xAxisLimits, yAxisLimitsA numeric vector of axis limits for the x-and
y-axis, respectively. This will preserve all data points but zoom in the plot.
xValuesLimits, yValuesLimitsA numeric vector of values limits for the x-and
y-axis, respectively. This will filter out the data points outside the specified ranges before plotting.
xAxisTicks, yAxisTicksA numeric vector or a function defining where to
position x-and y-axis ticks, respectively.
xAxisScale, yAxisScaleA character string defining axis scale.
Available options can be seen using tlf::Scaling list.
watermarkSize, watermarkColor, watermarkFontFamily, watermarkFontFace, watermarkAngle, watermarkAlign, watermarkMarginA character string specifying the aesthetic properties for the watermark.
plotBackgroundFill, plotBackgroundColor, plotBackgroundSize, plotBackgroundLinetypeA character string specifying the aesthetic properties for the plot background.
plotPanelBackgroundFill, plotPanelBackgroundColor, plotPanelBackgroundSize, plotPanelBackgroundLinetypeA character string specifying the aesthetic properties for the plot panel (inside of plot) background.
xAxisColor, xAxisSize, xAxisLinetypeA character string specifying the aesthetic properties for the x-axis.
yAxisColor, yAxisSize, yAxisLinetypeA character string specifying the aesthetic properties for the y-axis.
xGridColor, xGridSize, xGridLinetypeA character string specifying the aesthetic properties for the x-axis grid.
yGridColor, yGridSize, yGridLinetypeA character string specifying the aesthetic properties for the y-axis grid.
linesColor, linesSize, linesLinetype, linesAlphaA selection key or values for choice of color, fill, shape, size, linetype, alpha, respectively, for lines.
pointsColor, pointsShape, pointsSize, pointsAlphaA selection key or values for choice of color, fill, shape, size, linetype, alpha, respectively, for points.
ribbonsFill, ribbonsSize, ribbonsLinetype, ribbonsAlphaA selection key or values for choice of color, fill, shape, size, linetype, alpha, respectively, for ribbons.
errorbarsSize, errorbarsLinetype, errorbarsAlpha, errorbarsCapSizeA selection key or values for choice of color, fill, shape, size, linetype, alpha, cap width/height, respectively, for error bars.
displayLLOQA Boolean controlling display Lower Limit of Quantification lines. Default to True.
lloqDirectionA string controlling how the LLOQ lines are plotted. Can be "vertical", "horizontal" or "both". Default to NULL to respect specific plot configurations.
foldLinesLegendA Boolean controlling the drawing of the fold lines in the legend. Default to False.
foldLinesLegendDiagonalA Boolean controlling whether the fold lines legend should be horizontal or diagonal lines.
Active bindings
xUnit, yUnitUnits for quantities plotted on x- and y-axes, respectively.
title, subtitle, caption, xLabel, yLabel, legendTitle, watermarkA character
string providing plot annotations for plot title, subtitle, caption, x-axis
label, y-axis label, plot legend, watermark, respectively.
titleColor, titleSize, titleFontFace, titleFontFamily, titleAngle, titleAlign, titleMarginAesthetic properties for the plot title.
subtitleColor, subtitleSize, subtitleFontFace, subtitleFontFamily, subtitleAngle, subtitleAlign, subtitleMarginAesthetic properties for the plot subtitle.
captionColor, captionSize, captionFontFace, captionFontFamily, captionAngle, captionAlign, captionMarginAesthetic properties for the plot caption.
xLabelColor, xLabelSize, xLabelFontFace, xLabelFontFamily, xLabelAngle, xLabelAlign, xLabelMarginAesthetic properties for the plot xLabel.
yLabelColor, yLabelSize, yLabelFontFace, yLabelFontFamily, yLabelAngle, yLabelAlign, yLabelMarginAesthetic properties for the plot yLabel.
legendTitleSize, legendTitleColor, legendTitleFontFamily, legendTitleFontFace, legendTitleAngle, legendTitleAlign, legendTitleMarginAesthetic properties for the legend title.
legendKeysSize, legendKeysColor, legendKeysFontFamily, legendKeysFontFace, legendKeysAngle, legendKeysAlign, legendKeysMarginAesthetic properties for the legend caption.
legendBackgroundColor, legendBackgroundAlpha, legendBorderColor, legendBorderType, legendBorderSizeAesthetic properties for the legend box
xAxisTicksLabels, xAxisLabelTicksSize, xAxisLabelTicksColor, xAxisLabelTicksFontFamily, xAxisLabelTicksFontFace, xAxisLabelTicksAngle, xAxisLabelTicksAlign, xAxisLabelTicksMargin, xAxisExpandAesthetic properties for the x-axis label.
yAxisTicksLabels, yAxisLabelTicksSize, yAxisLabelTicksColor, yAxisLabelTicksFontFamily, yAxisLabelTicksFontFace, yAxisLabelTicksAngle, yAxisLabelTicksAlign, yAxisLabelTicksMargin, yAxisExpandAesthetic properties for the y-axis label.
xAxisLimits, yAxisLimitsA numeric vector of axis limits for the x-and
y-axis, respectively. This will preserve all data points but zoom in the plot.
xValuesLimits, yValuesLimitsA numeric vector of values limits for the x-and
y-axis, respectively. This will filter out the data points outside the specified ranges before plotting.
xAxisTicks, yAxisTicksA numeric vector or a function defining where to
position x-and y-axis ticks, respectively.
xAxisScale, yAxisScaleA character string defining axis scale.
Available options can be seen using tlf::Scaling list.
watermarkSize, watermarkColor, watermarkFontFamily, watermarkFontFace, watermarkAngle, watermarkAlign, watermarkMarginA character string specifying the aesthetic properties for the watermark.
plotBackgroundFill, plotBackgroundColor, plotBackgroundSize, plotBackgroundLinetypeA character string specifying the aesthetic properties for the plot background.
plotPanelBackgroundFill, plotPanelBackgroundColor, plotPanelBackgroundSize, plotPanelBackgroundLinetypeA character string specifying the aesthetic properties for the plot panel (inside of plot) background.
xAxisColor, xAxisSize, xAxisLinetypeA character string specifying the aesthetic properties for the x-axis.
yAxisColor, yAxisSize, yAxisLinetypeA character string specifying the aesthetic properties for the y-axis.
xGridColor, xGridSize, xGridLinetypeA character string specifying the aesthetic properties for the x-axis grid.
yGridColor, yGridSize, yGridLinetypeA character string specifying the aesthetic properties for the y-axis grid.
linesColor, linesSize, linesLinetype, linesAlphaA selection key or values for choice of color, fill, shape, size, linetype, alpha, respectively, for lines.
pointsColor, pointsShape, pointsSize, pointsAlphaA selection key or values for choice of color, fill, shape, size, linetype, alpha, respectively, for points.
ribbonsFill, ribbonsSize, ribbonsLinetype, ribbonsAlphaA selection key or values for choice of color, fill, shape, size, linetype, alpha, respectively, for ribbons.
errorbarsSize, errorbarsLinetype, errorbarsAlpha, errorbarsCapSizeA selection key or values for choice of color, fill, shape, size, linetype, alpha, cap width/height, respectively, for error bars.
Methods
Public methods
Method clone()
The objects of this class are cloneable with this method.
Usage
DefaultPlotConfiguration$clone(deep = FALSE)
Arguments
deepWhether to make a deep clone.
See Also
Other plotting:
plotIndividualTimeProfile(),
plotObservedVsSimulated(),
plotPopulationTimeProfile(),
plotResidualsVsSimulated(),
plotResidualsVsTime()
Examples
# Create a new instance of this class
myPlotConfiguration <- DefaultPlotConfiguration$new()
# Change defaults
myPlotConfiguration$title <- "My Plot Title"
myPlotConfiguration$pointsSize <- 2.5
myPlotConfiguration$legendTitle <- "My Legend Title"
# Checking new values
myPlotConfiguration$pointsSize
# To check all default values, you can print the object
myPlotConfiguration
Open-Systems-Pharmacology/OSPSuite-R documentation built on April 28, 2024, 2:24 a.m.
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| DefaultPlotConfiguration | R Documentation |
Plot configuration for OSP plots
Description
R6 configuration class defining aesthetic properties of plots that can be
created with plotIndividualTimeProfile(), plotPopulationTimeProfile(),
plotObservedVsSimulated(), and plotResidualsVsTime().
To interactively explore various aesthetic properties and appearance of plots
with these properties, you can use the Shiny app from {tlf} package.
The following sections provide more details on how to customize it further.
Specifying aesthetic properties
Aesthetic mappings describe how groups are mapped to visual properties (color, shape, size, etc.) of the geometries included in the plot (e.g. point, line, ribbon, etc.).
The supported values for each property can be seen using {tlf} lists:
color, fill:
tlf::ColorMapsshape:
tlf::Shapeslegend position:
tlf::LegendPositionsalignments:
tlf::Alignmentslinetype:
tlf::Linetypes
For example, all parameters related to color (titleColor,
yAxisLabelTicksColor, etc.) accept any of the palettes available in
tlf::ColorMaps (e.g. tlf::ColorMaps$ospDefault).
Note that these are named lists, and, therefore, if you want to assign a specific element from a list to an object's public field, you will have to extract that element first.
For example, if you want to specify that the legend position should be outside the plot to the left and at bottom, you will have to do the following:
myPlotConfiguration <- DefaultPlotConfiguration$new() myPlotConfiguration$legendPosition <- tlf::LegendPositions$outsideBottomLeft
Of course, the extracted element doesn't have to be a single value, and can also be an atomic vector. For example, if you want to assign a different line type to each group in a profile plot, you will have to assign a vector of line types.
myPlotConfiguration <- DefaultPlotConfiguration$new() myPlotConfiguration$linesLinetype <- names(tlf::Linetypes)
If there are more number of elements in the vector than the number of groups, the additional elements will be ignored.
Specifying units
The available units for x-and y-axes depend on the dimensions of these
quantities (ospsuite::ospDimensions). Supported units can be seen with
ospsuite::ospUnits.
Specifying fonts
A font is a particular set of glyphs (character shapes), differentiated from other fonts in the same family by additional properties such as stroke weight, slant, relative width, etc.
A font face (aka typeface) is the design of lettering, characterized by
variations in size, weight (e.g. bold), slope (e.g. italic), width (e.g.
condensed), and so on. The available font faces can seen using
tlf::FontFaces list.
A font family is a grouping of fonts defined by shared design styles.
The available font families will depend on which fonts have been installed on your computer. This information can be extracted by running the following code:
# install.packages("systemfonts")
library(systemfonts)
system_fonts()
Specifying scaling
Transformations for both x- and y-axes can be (independently) specified. The default is linear for both axes.
The available transformations can be seen in the tlf::Scaling list.
Specifying tick labels
tlf::TickLabelTransforms lists of all available tick label transformations.
For example, selecting tlf::TickLabelTransforms$identity will display tick
labels as they are, while selecting tlf::TickLabelTransforms$log will
display tick labels in logarithmic scale format.
Saving plot
By default, the plots will be shown in plot pane of your IDE, but the plots
can also be saved to a file using the ggplot2::ggsave() function.
myPlot <- plotIndividualTimeProfile(myDataComb, myPC) ggplot2::ggsave(filename = "plot_1.png", plot = myPlot)
Public fields
xUnit, yUnitUnits for quantities plotted on x- and y-axes, respectively.
title, subtitle, caption, xLabel, yLabel, legendTitle, watermarkA character string providing plot annotations for plot title, subtitle, caption, x-axis label, y-axis label, plot legend, watermark, respectively.
titleColor, titleSize, titleFontFace, titleFontFamily, titleAngle, titleAlign, titleMarginAesthetic properties for the plot title.
subtitleColor, subtitleSize, subtitleFontFace, subtitleFontFamily, subtitleAngle, subtitleAlign, subtitleMarginAesthetic properties for the plot subtitle.
captionColor, captionSize, captionFontFace, captionFontFamily, captionAngle, captionAlign, captionMarginAesthetic properties for the plot caption.
xLabelColor, xLabelSize, xLabelFontFace, xLabelFontFamily, xLabelAngle, xLabelAlign, xLabelMarginAesthetic properties for the plot xLabel.
yLabelColor, yLabelSize, yLabelFontFace, yLabelFontFamily, yLabelAngle, yLabelAlign, yLabelMarginAesthetic properties for the plot yLabel.
legendPositionA character string defining the legend position. Available options can be seen using
tlf::LegendPositionslist.legendTitleSize, legendTitleColor, legendTitleFontFamily, legendTitleFontFace, legendTitleAngle, legendTitleAlign, legendTitleMarginAesthetic properties for the legend title.
legendKeysSize, legendKeysColor, legendKeysFontFamily, legendKeysFontFace, legendKeysAngle, legendKeysAlign, legendKeysMarginAesthetic properties for the legend caption.
legendBackgroundColor, legendBackgroundAlpha, legendBorderColor, legendBorderType, legendBorderSizeAesthetic properties for the legend box
xAxisTicksLabels, xAxisLabelTicksSize, xAxisLabelTicksColor, xAxisLabelTicksFontFamily, xAxisLabelTicksFontFace, xAxisLabelTicksAngle, xAxisLabelTicksAlign, xAxisLabelTicksMargin, xAxisExpandAesthetic properties for the x-axis label.
yAxisTicksLabels, yAxisLabelTicksSize, yAxisLabelTicksColor, yAxisLabelTicksFontFamily, yAxisLabelTicksFontFace, yAxisLabelTicksAngle, yAxisLabelTicksAlign, yAxisLabelTicksMargin, yAxisExpandAesthetic properties for the y-axis label.
xAxisLimits, yAxisLimitsA numeric vector of axis limits for the x-and y-axis, respectively. This will preserve all data points but zoom in the plot.
xValuesLimits, yValuesLimitsA numeric vector of values limits for the x-and y-axis, respectively. This will filter out the data points outside the specified ranges before plotting.
xAxisTicks, yAxisTicksA numeric vector or a function defining where to position x-and y-axis ticks, respectively.
xAxisScale, yAxisScaleA character string defining axis scale. Available options can be seen using
tlf::Scalinglist.watermarkSize, watermarkColor, watermarkFontFamily, watermarkFontFace, watermarkAngle, watermarkAlign, watermarkMarginA character string specifying the aesthetic properties for the watermark.
plotBackgroundFill, plotBackgroundColor, plotBackgroundSize, plotBackgroundLinetypeA character string specifying the aesthetic properties for the plot background.
plotPanelBackgroundFill, plotPanelBackgroundColor, plotPanelBackgroundSize, plotPanelBackgroundLinetypeA character string specifying the aesthetic properties for the plot panel (inside of plot) background.
xAxisColor, xAxisSize, xAxisLinetypeA character string specifying the aesthetic properties for the x-axis.
yAxisColor, yAxisSize, yAxisLinetypeA character string specifying the aesthetic properties for the y-axis.
xGridColor, xGridSize, xGridLinetypeA character string specifying the aesthetic properties for the x-axis grid.
yGridColor, yGridSize, yGridLinetypeA character string specifying the aesthetic properties for the y-axis grid.
linesColor, linesSize, linesLinetype, linesAlphaA selection key or values for choice of color, fill, shape, size, linetype, alpha, respectively, for lines.
pointsColor, pointsShape, pointsSize, pointsAlphaA selection key or values for choice of color, fill, shape, size, linetype, alpha, respectively, for points.
ribbonsFill, ribbonsSize, ribbonsLinetype, ribbonsAlphaA selection key or values for choice of color, fill, shape, size, linetype, alpha, respectively, for ribbons.
errorbarsSize, errorbarsLinetype, errorbarsAlpha, errorbarsCapSizeA selection key or values for choice of color, fill, shape, size, linetype, alpha, cap width/height, respectively, for error bars.
displayLLOQA Boolean controlling display Lower Limit of Quantification lines. Default to True.
lloqDirectionA string controlling how the LLOQ lines are plotted. Can be "vertical", "horizontal" or "both". Default to NULL to respect specific plot configurations.
foldLinesLegendA Boolean controlling the drawing of the fold lines in the legend. Default to False.
foldLinesLegendDiagonalA Boolean controlling whether the fold lines legend should be horizontal or diagonal lines.
Active bindings
xUnit, yUnitUnits for quantities plotted on x- and y-axes, respectively.
title, subtitle, caption, xLabel, yLabel, legendTitle, watermarkA character string providing plot annotations for plot title, subtitle, caption, x-axis label, y-axis label, plot legend, watermark, respectively.
titleColor, titleSize, titleFontFace, titleFontFamily, titleAngle, titleAlign, titleMarginAesthetic properties for the plot title.
subtitleColor, subtitleSize, subtitleFontFace, subtitleFontFamily, subtitleAngle, subtitleAlign, subtitleMarginAesthetic properties for the plot subtitle.
captionColor, captionSize, captionFontFace, captionFontFamily, captionAngle, captionAlign, captionMarginAesthetic properties for the plot caption.
xLabelColor, xLabelSize, xLabelFontFace, xLabelFontFamily, xLabelAngle, xLabelAlign, xLabelMarginAesthetic properties for the plot xLabel.
yLabelColor, yLabelSize, yLabelFontFace, yLabelFontFamily, yLabelAngle, yLabelAlign, yLabelMarginAesthetic properties for the plot yLabel.
legendTitleSize, legendTitleColor, legendTitleFontFamily, legendTitleFontFace, legendTitleAngle, legendTitleAlign, legendTitleMarginAesthetic properties for the legend title.
legendKeysSize, legendKeysColor, legendKeysFontFamily, legendKeysFontFace, legendKeysAngle, legendKeysAlign, legendKeysMarginAesthetic properties for the legend caption.
legendBackgroundColor, legendBackgroundAlpha, legendBorderColor, legendBorderType, legendBorderSizeAesthetic properties for the legend box
xAxisTicksLabels, xAxisLabelTicksSize, xAxisLabelTicksColor, xAxisLabelTicksFontFamily, xAxisLabelTicksFontFace, xAxisLabelTicksAngle, xAxisLabelTicksAlign, xAxisLabelTicksMargin, xAxisExpandAesthetic properties for the x-axis label.
yAxisTicksLabels, yAxisLabelTicksSize, yAxisLabelTicksColor, yAxisLabelTicksFontFamily, yAxisLabelTicksFontFace, yAxisLabelTicksAngle, yAxisLabelTicksAlign, yAxisLabelTicksMargin, yAxisExpandAesthetic properties for the y-axis label.
xAxisLimits, yAxisLimitsA numeric vector of axis limits for the x-and y-axis, respectively. This will preserve all data points but zoom in the plot.
xValuesLimits, yValuesLimitsA numeric vector of values limits for the x-and y-axis, respectively. This will filter out the data points outside the specified ranges before plotting.
xAxisTicks, yAxisTicksA numeric vector or a function defining where to position x-and y-axis ticks, respectively.
xAxisScale, yAxisScaleA character string defining axis scale. Available options can be seen using
tlf::Scalinglist.watermarkSize, watermarkColor, watermarkFontFamily, watermarkFontFace, watermarkAngle, watermarkAlign, watermarkMarginA character string specifying the aesthetic properties for the watermark.
plotBackgroundFill, plotBackgroundColor, plotBackgroundSize, plotBackgroundLinetypeA character string specifying the aesthetic properties for the plot background.
plotPanelBackgroundFill, plotPanelBackgroundColor, plotPanelBackgroundSize, plotPanelBackgroundLinetypeA character string specifying the aesthetic properties for the plot panel (inside of plot) background.
xAxisColor, xAxisSize, xAxisLinetypeA character string specifying the aesthetic properties for the x-axis.
yAxisColor, yAxisSize, yAxisLinetypeA character string specifying the aesthetic properties for the y-axis.
xGridColor, xGridSize, xGridLinetypeA character string specifying the aesthetic properties for the x-axis grid.
yGridColor, yGridSize, yGridLinetypeA character string specifying the aesthetic properties for the y-axis grid.
linesColor, linesSize, linesLinetype, linesAlphaA selection key or values for choice of color, fill, shape, size, linetype, alpha, respectively, for lines.
pointsColor, pointsShape, pointsSize, pointsAlphaA selection key or values for choice of color, fill, shape, size, linetype, alpha, respectively, for points.
ribbonsFill, ribbonsSize, ribbonsLinetype, ribbonsAlphaA selection key or values for choice of color, fill, shape, size, linetype, alpha, respectively, for ribbons.
errorbarsSize, errorbarsLinetype, errorbarsAlpha, errorbarsCapSizeA selection key or values for choice of color, fill, shape, size, linetype, alpha, cap width/height, respectively, for error bars.
Methods
Public methods
Method clone()
The objects of this class are cloneable with this method.
Usage
DefaultPlotConfiguration$clone(deep = FALSE)
Arguments
deepWhether to make a deep clone.
See Also
Other plotting:
plotIndividualTimeProfile(),
plotObservedVsSimulated(),
plotPopulationTimeProfile(),
plotResidualsVsSimulated(),
plotResidualsVsTime()
Examples
# Create a new instance of this class
myPlotConfiguration <- DefaultPlotConfiguration$new()
# Change defaults
myPlotConfiguration$title <- "My Plot Title"
myPlotConfiguration$pointsSize <- 2.5
myPlotConfiguration$legendTitle <- "My Legend Title"
# Checking new values
myPlotConfiguration$pointsSize
# To check all default values, you can print the object
myPlotConfiguration
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