ConfigurationPlan | R Documentation |
R6 class for ConfigurationPlan guiding Qualification Workflow
plots
list defining PlotConfiguration
settings for specific tasks
inputs
data.frame or list mapping input files to their paths
intro
data.frame or list mapping introduction files to their paths
markdownIntro
name of markdown file that includes intro content
referenceFolder
Reference path for accessing inputs
workflowFolder
path of the output folder created or used by the Workflow.
sections
data.frame mapping section ids to their paths
simulationMappings
data.frame mapping simulations to their paths
observedDataSets
data.frame mapping observed datasets to their paths
getSectionPath()
Get location of directory corresponding to a specific section Id
ConfigurationPlan$getSectionPath(id)
id
section identifier
The section path corresponding to the id in the configuration plan field sections
getSectionTitle()
Get markdown title to a specific section Id
ConfigurationPlan$getSectionTitle(id)
id
section identifier
The title associated with "#" corresponding to the subsection level
getSectionMarkdown()
Get location of .md file corresponding to a specific section Id
ConfigurationPlan$getSectionMarkdown(id)
id
section identifier
The markdown file corresponding to the id in the configuration plan field sections
getSectionLevel()
Get section level
ConfigurationPlan$getSectionLevel(id)
id
section identifier
Section level
getIntroMarkdown()
Get location of .md intro file
ConfigurationPlan$getIntroMarkdown()
The markdown file corresponding to introduction
copySectionContent()
Copy content to section markdown
ConfigurationPlan$copySectionContent(id)
id
section identifier
copyInput()
Copy input to section markdown
ConfigurationPlan$copyInput(input)
input
list including SectionId and Path
copyIntro()
Copy intro to intro markdown
ConfigurationPlan$copyIntro(intro)
intro
list including Path
copyContentFiles()
If available, copy all files and folders of Content
directory into <workflowFolder>
ConfigurationPlan$copyContentFiles()
getObservedDataPath()
Get location of observed data corresponding to a specific observedDataSet Id
ConfigurationPlan$getObservedDataPath(id)
id
observedDataSet identifier
The observed data file path corresponding to the id in the configuration plan field observedDataSet
getMolWeightForObservedData()
Get molecular weight of observed data corresponding to a specific observedDataSet Id
ConfigurationPlan$getMolWeightForObservedData(id)
id
observedDataSet identifier
The observed data file path corresponding to the id in the configuration plan field observedDataSet
getSimulationPath()
Get location of simulation file corresponding to a specific simulation and project names
ConfigurationPlan$getSimulationPath(project, simulation)
project
name of simulation project
simulation
name of the simulation
The simulation file path corresponding to the project and simulation in the configuration plan field simulationMappings
getPopulationPath()
Get location of population file corresponding to a specific simulation and project names
ConfigurationPlan$getPopulationPath(project, simulation)
project
name of simulation project
simulation
name of the simulation
The population file path corresponding to the project and simulation in the configuration plan field simulationMappings
getSimulationResultsPath()
Get location of simulation result file corresponding to a specific simulation and project names
ConfigurationPlan$getSimulationResultsPath(project, simulation)
project
name of simulation project
simulation
name of the simulation
The simulation results file path corresponding to the project and simulation in the configuration plan field simulationMappings
getPKAnalysisResultsPath()
Get location of PK Analysis result file corresponding to a specific simulation and project names
ConfigurationPlan$getPKAnalysisResultsPath(project, simulation)
project
name of simulation project
simulation
name of the simulation
The PKAnalysis results file path corresponding to the project and simulation in the configuration plan field simulationMappings
updateTheme()
Update environment theme that will be used as default during workflow
ConfigurationPlan$updateTheme()
Other qualification workflow:
QualificationVersionInfo
,
adjustTitlePage()
,
loadConfigurationPlan()
,
loadQualificationWorkflow()
,
startQualificationRunner()
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