Man pages for Open-Systems-Pharmacology/OSPSuite.ReportingEngine
R package to create reports for the Open Systems Pharmacology models
| activateWorkflowTasks | activateWorkflowTasks |
| addFigureChunk | addFigureChunk |
| addLineBreakToCaption | addLineBreakToCaption |
| addMarkdownToc | addMarkdownToc |
| addNewPkParameter | addNewPkParameter |
| addOutputToComparisonTimeProfile | addOutputToComparisonTimeProfile |
| addSectionNumbersToMarkdown | addSectionNumbersToMarkdown |
| addStudyParameters | addStudyParameters |
| addTableAndFigureNumbersToMarkdown | addTableAndFigureNumbersToMarkdown |
| addTableChunk | addTableChunk |
| addTextChunk | addTextChunk |
| addUserDefinedTask | addUserDefinedTask |
| addXParametersForDemogrpahyPlot | addXParametersForDemogrpahyPlot |
| addXParametersForPKParametersPlot | addXParametersForPKParametersPlot |
| addYParametersForDemogrpahyPlot | addYParametersForDemogrpahyPlot |
| addYParametersForPKParametersPlot | addYParametersForPKParametersPlot |
| adjustTitlePage | adjustTitlePage |
| AggregationConfiguration | AggregationConfiguration |
| AllAvailableTasks | AllAvailableTasks |
| analyzeCoreSensitivity | analyzeCoreSensitivity |
| analyzeSensitivity | analyzeSensitivity |
| anchor | anchor |
| ApplicationRanges | ApplicationRanges |
| asisCodeIds | asisCodeIds |
| asTimeAfterDose | asTimeAfterDose |
| autoAxesLimits | autoAxesLimits |
| autoAxesTicksFromLimits | autoAxesTicksFromLimits |
| buildQualificationDDIDataframe | buildQualificationDDIDataframe |
| calculateArithmeticErrorRange | calculateArithmeticErrorRange |
| calculateGeometricErrorRange | calculateGeometricErrorRange |
| calculateGMFE | calculateGMFE |
| calculatePKParameters | calculatePKParameters |
| CalculatePKParametersTask | CalculatePKParametersTask |
| checkAllCoresSuccessful | checkAllCoresSuccessful |
| checkLibraryLoaded | checkLibraryLoaded |
| checkPopulationLoaded | checkPopulationLoaded |
| checkSimulationLoaded | checkSimulationLoaded |
| checkTaskInputsExist | checkTaskInputsExist |
| ConfigurationFontsFields | ConfigurationFontsFields |
| ConfigurationLinetypes | ConfigurationLinetypes |
| ConfigurationPlan | ConfigurationPlan |
| ConfigurationPlots | ConfigurationPlots |
| ConfigurationPlotSettings | ConfigurationPlotSettings |
| ConfigurationScales | ConfigurationScales |
| ConfigurationShapes | ConfigurationShapes |
| copyReport | copyReport |
| createSectionOutput | createSectionOutput |
| createWorkflowFromExcelInput | createWorkflowFromExcelInput |
| DataSelectionKeys | DataSelectionKeys |
| DataSource | DataSource |
| dataSourceNamesFromIdentifier | dataSourceNamesFromIdentifier |
| DataSourcesCodeIdentifiers | DataSourceCodeIdentifiers |
| ddiPKRatioColumnName | Column names to check in observed data based on Configuration... |
| ddiPlotTypeSpecifications | Specifications of each DDI plot type |
| ddiSubplotTypes | Allowed DDI subplot types |
| defaultQuantileVec | defaultQuantileVec |
| defaultSensitivityAnalysisNumberOfCores | defaultSensitivityAnalysisNumberOfCores |
| defaultSimulationNumberOfCores | defaultSimulationNumberOfCores |
| defaultVariationRange | defaultVariationRange |
| displayConfigurationPlanPlotInfo | displayConfigurationPlanPlotInfo |
| displayDebugLogs | displayDebugLogs |
| displayRatioMeasureAnalyticalSolution | displayRatioMeasureAnalyticalSolution |
| evalDataFilter | evalDataFilter |
| ExcelMessaging | ExcelMessaging |
| extractNameAndUnit | extractNameAndUnit |
| formatPKParametersTable | formatPKParametersTable |
| generateDDIPlotPKParameterName | generateDDIPlotPKParameterName |
| generateDDIQualificationDDIPlot | generateDDIQualificationDDIPlot |
| generateResultFileNames | generateResultFileNames |
| geomean | geomean |
| geomeanDividedBySD | geomeanDividedBySD |
| geomeanMultipliedBySD | geomeanMultipliedBySD |
| getAggregateFromStat | getAggregateFromStat |
| getAllowedCores | getAllowedCores |
| getAllowedCoresLinuxKubernetes | getAllowedCoresLinuxKubernetes |
| getAnchorName | getAnchorName |
| getAxesProperties | getAxesProperties |
| getAxesSettings | getAxesSettings |
| getBoxWhiskerPlotConfiguration | getBoxWhiskerPlotConfiguration |
| getCaptionFromStat | getCaptionFromStat |
| getColorFromOutputGroup | getColorFromOutputGroup |
| getColorGroupForPKParameterPlot | getColorGroupForPKParameterPlot |
| getComparisonTimeProfileOutputsDataframe | getComparisonTimeProfileOutputsDataframe |
| getCompoundNameFromPath | getCompoundNameFromPath |
| getDataSourcesContent | getDataSourcesContent |
| getDDIOutputsDataframe | getDDIOutputsDataframe |
| getDDIRatioList | getDDIRatioList |
| getDDISection | getDDISection |
| getDDITable | getDDITable |
| getDefaultDemographyXParameters | getDefaultDemographyXParameters |
| getDefaultFileName | getDefaultFileName |
| getDefaultFolderName | getDefaultFolderName |
| getDefaultMCRandomSeed | getDefaultMCRandomSeed |
| getDefaultMCRepetitions | getDefaultMCRepetitions |
| getDefaultPkParametersXParameters | getDefaultPKParametersXParameters |
| getDefaultPropertiesFromTheme | getDefaultPropertyFromTheme |
| getDefaultRETheme | getDefaultRETheme |
| getDefaultTimeProfileAxesSettings | getDefaultTimeProfileAxesSettings |
| getDefaultTotalSensitivityThreshold | getDefaultTotalSensitivityThreshold |
| getDemographyAggregatedData | getDemographyAggregatedData |
| getElapsedTime | getElapsedTime |
| getFigurePathsFromReport | getFigurePathsFromReport |
| getFileLocationFromType | getFileLocationFromType |
| getFirstLineElement | getFirstLineElement |
| getGOFAxesUnits | getGOFAxesUnits |
| getGOFDataForMapping | getGOFDataForMapping |
| getGOFOutputsDataframe | getGOFOutputsDataframe |
| getGOFPlotConfiguration | getGOFPlotConfiguration |
| getGuestDeltaFromConfigurationPlan | getGuestDeltaFromConfigurationPlan |
| getHeaderNames | getHeaderNames |
| getIdentifierInfo | getIdentifierInfo |
| getIndividualSAResultsFileName | getIndividualSAResultsFileName |
| getIntroFromReportTitle | getIntroFromReportTitle |
| getLineBreakWidth | getLineBreakWidth |
| getMassBalanceDataMapping | getMassBalanceDataMapping |
| getMassBalancePlotConfiguration | getMassBalancePlotConfiguration |
| getMeanPKAnalysesFromOutput | getMeanPKAnalysesFromOutput |
| getMeanSensitivityAnalysisResultsFileNames | getMeanSensitivityAnalysisResultsFileNames |
| getMechanismName | getMechanismName |
| getMetaDataFrame | getMetaDataFrame |
| getMolWeightForCompound | getMolWeightForCompound |
| getObjectNameAsString | getObjectNameAsString |
| getObjectNamesInGlobalEnv | getObjectNamesInGlobalEnv |
| getObservedCurveProperties | getObservedCurveProperties |
| getObservedDataFromConfigurationPlan | getObservedDataFromConfigurationPlan |
| getObservedDataFromOutput | getObservedDataFromOutput |
| getObservedDataIdFromPath | getObservedDataIdFromPath |
| getObservedErrorValues | getObservedErrorValues |
| getOutputGroups | getOutputGroups |
| getOutputPathsInSimulationSet | getOutputPathsInSimulationSet |
| getOutputsContent | getOutputsContent |
| getOutputsFromConfigurationPlan | getOutputsFromConfigurationPlan |
| getOutputsFromGOFMergedPlotsConfiguration | getOutputsFromGOFMergedPlotsConfiguration |
| getOutputsFromTimeProfileConfiguration | getOutputsFromTimeProfileConfiguration |
| getPKAnalysisResultsFileNames | getPKAnalysisResultsFileNames |
| getPkOutputIndexDf | getPkOutputIndexDf |
| getPKParameterGroupsInOutput | getPKParameterGroupsInOutput |
| getPKParameterMeasure | getPKParameterMeasure |
| getPKParameterRatioMeasureFromMCSampling | getPKParameterRatioMeasureFromMCSampling |
| getPKParameterRatioPKTable | getPKParameterRatioPKTable |
| getPKParametersAcrossPopulations | getPKParametersAcrossPopulations |
| getPKParametersContent | getPKParametersContent |
| getPKParametersInfoContent | getPKParametersInfoContent |
| getPKParametersInOutput | getPKParametersInOutput |
| getPKParametersInSimulationSet | getPKParametersInSimulationSet |
| getPKRatioForMapping | getPKRatioForMapping |
| getPKRatioOutputsDataframe | getPKRatioOutputsDataframe |
| getPKResultsDataFrame | getPKResultsDataFrame |
| getPlotConfigurationFromPlan | getPlotConfigurationFromPlan |
| getPlotSettings | getPlotSettings |
| getPopSensDfForPkAndOutput | getPopSensDfForPkAndOutput |
| getPopulationPKAnalysesFromOutput | getPopulationPKAnalysesFromOutput |
| getPopulationPKData | getPopulationPKData |
| getPopulationPKMetaData | getPopulationPKMetaData |
| getPopulationResultsFromOutput | getPopulationResultsFromOutput |
| getPopulationSensitivityAnalysisResultsFileNames | getPopulationSensitivityAnalysisResultsFileNames |
| getQualificationDDIPlotData | getQualificationDDIPlotData |
| getQualificationDDIRatioMeasure | getQualificationDDIRatioMeasure |
| getQualificationGOFData | getQualificationGOFData |
| getQualificationGOFGMFE | getQualificationGOFGMFE |
| getQualificationGOFPlot | getQualificationGOFPlot |
| getQualificationPKRatioData | getQualificationPKRatioData |
| getQualificationPKRatioGMFE | getQualificationPKRatioGMFE |
| getQualificationPKRatioMeasure | getQualificationPKRatioMeasure |
| getQualificationPKRatioPlot | getQualificationPKRatioPlot |
| getQualificationPKRatioTable | getQualificationPKRatioTable |
| getQuantileIndividualIds | getQuantileIndividualIds |
| getRatioMeasureAnalyticalSolution | getRatioMeasureAnalyticalSolution |
| getReaderFunction | getReaderFunction |
| getReferencePopulationName | getReferencePopulationName |
| getReportingEngineInfo | getReportingEngineInfo |
| getResiduals | getResiduals |
| getResidualsPlotResults | getResidualsPlotResults |
| getSAFileIndex | getSAFileIndex |
| getScriptDocumentation | getScriptDocumentation |
| getSelectedData | getSelectedData |
| getSelectedRows | getSelectedRows |
| getSensitivityVariableParameterPaths | getSensitivityVariableParameterPaths |
| getSimulatedCurveProperties | getSimulatedCurveProperties |
| getSimulatedResultsFromOutput | getSimulatedResultsFromOutput |
| getSimulationDescriptor | getSimulationDescriptor |
| getSimulationParameterDisplayPaths | getSimulationParameterDisplayPaths |
| getSimulationResultFileNames | getSimulationResultFileNames |
| getSimulationSetContent | getSimulationSetContent |
| getSimulationSetType | getSimulationSetType |
| getSimulationTimeRanges | getSimulationTimeRanges |
| getSmartZoomLimits | getSmartZoomLimits |
| getSplitPositions | getSplitPositions |
| getStatisticsFromType | getStatisticsFromType |
| getTaskInputs | getTaskInputs |
| getTimeProfileObservedDataFromResults | getTimeProfileObservedDataFromResults |
| getTimeProfileOutputsDataframe | getTimeProfileOutputsDataframe |
| getTimeProfilePlotConfiguration | getTimeProfilePlotConfiguration |
| getTimeProfilePlotResults | getTimeProfilePlotResults |
| getTimeStamp | getTimeStamp |
| getTimeTicksFromUnit | getTimeTicksFromUnit |
| getTitleInfo | getTitleInfo |
| getUserDefPKParametersContent | getUserDefPKParametersContent |
| getWorkflowContent | getWorkflowContent |
| getWorkflowParameterDisplayPaths | getWorkflowParameterDisplayPaths |
| getWorkflowReferencePopulationName | getWorkflowReferencePopulationName |
| getXParametersForDemogrpahyPlot | getXParametersForDemogrpahyPlot |
| getXParametersForPKParametersPlot | getXParametersForPKParametersPlot |
| getYParametersForDemogrpahyPlot | getYParametersForDemogrpahyPlot |
| getYParametersForPKParametersPlot | getYParametersForPKParametersPlot |
| GofPlotTask | GofPlotTask |
| GofTaskSettings | GofTaskSettings |
| hasAnchor | hasAnchor |
| highlight | highlight |
| inactivateWorkflowTasks | inactivateWorkflowTasks |
| individualSensitivityAnalysis | individualSensitivityAnalysis |
| introToYamlHeader | introToYamlHeader |
| isObservedData | isObservedData |
| isSamePopulationInSets | isSamePopulationInSets |
| isValidatedSystem | isValidatedSystem |
| lastPathElement | lastPathElement |
| loadCalculatePKParametersTask | loadCalculatePKParametersTask |
| loadCalculateSensitivityTask | loadCalculateSensitivityTask |
| loadConfigurationPlan | loadConfigurationPlan |
| loadGOFMergedTask | loadGOFMergedTask |
| loadLibraryOnCores | loadLibraryOnCores |
| loadObservedDataFromSimulationSet | loadObservedDataFromSimulationSet |
| loadPlotAbsorptionTask | loadPlotAbsorptionTask |
| loadPlotDDIRatioTask | loadPlotDDIRatioTask |
| loadPlotDemographyTask | loadPlotDemographyTask |
| loadPlotMassBalanceTask | loadPlotMassBalanceTask |
| loadPlotPKParametersTask | loadPlotPKParametersTask |
| loadPlotPKRatioTask | loadPlotPKRatioTask |
| loadPlotSensitivityTask | loadPlotSensitivityTask |
| loadPlotTimeProfilesAndResidualsTask | loadPlotTimeProfilesAndResidualsTask |
| loadPopulationOnCores | loadPopulationOnCores |
| loadQualificationComparisonTimeProfileTask | loadQualificationComparisonTimeProfileTask |
| loadQualificationTimeProfilesTask | loadPlotTimeProfilesTask |
| loadQualificationWorkflow | loadQualificationWorkflow |
| loadSimulateTask | loadSimulateTask |
| loadSimulationOnCores | loadSimulationOnCores |
| loadSimulationWithUpdatedPaths | loadSimulationWithUpdatedPaths |
| loadStudyDesign | loadStudyDesign |
| loadWorkflowPopulation | loadWorkflowPopulation |
| logCatch | logCatch |
| logDebug | logDebug |
| logError | logError |
| logErrorThenStop | logErrorThenStop |
| Logging | Logging |
| logicalCodeIds | logicalCodeIds |
| logInfo | logInfo |
| LogTypes | LogTypes |
| lookupPKParameterDisplayName | lookupPKParameterDisplayName |
| mapStudyDesignSources | mapStudyDesignSources |
| mapStudyDesignTargets | mapStudyDesignTargets |
| massMoleConversion | massMoleConversion |
| MeanModelWorkflow | MeanModelWorkflow |
| measureValuesBetween | measureValuesBetween |
| mergeMarkdownFiles | mergeMarkdownFiles |
| newOutputColor | newOutputColor |
| OptionalSettings | OptionalSettings |
| Output | Output |
| outputNamesFromIdentifier | outputNamesFromIdentifier |
| OutputsCodeIdentifiers | OutputsCodeIdentifiers |
| parseObservationsDataFrame | parseObservationsDataFrame |
| parseVariableFromObject | parseVariableFromObject |
| parseVariableToObject | parseVariableToObject |
| pkDictionaryQualificationOSP | Dictionary for 'ospsuite' PK parameters defined by... |
| PkParameterInfo | PkParameterInfo |
| pkParameterTableAsRelativeChange | pkParameterTableAsRelativeChange |
| plotAbsorptionTimeProfile | plotAbsorptionTimeProfile |
| plotDemographyHistogram | plotDemographyHistogram |
| plotDemographyParameters | plotDemographyParameters |
| plotMeanAbsorption | plotMeanAbsorption |
| plotMeanGoodnessOfFit | plotMeanGoodnessOfFit |
| plotMeanMassBalance | plotMeanMassBalance |
| plotMeanPKParameters | plotMeanPKParameters |
| plotMeanSensitivity | plotMeanSensitivity |
| plotMeanTimeProfile | plotMeanTimeProfile |
| plotMeanTimeProfileLog | plotMeanTimeProfileLog |
| plotPopTimeProfile | plotPopTimeProfile |
| plotPopTimeProfileLog | plotPopTimeProfileLog |
| plotPopulationGoodnessOfFit | plotPopulationGoodnessOfFit |
| plotPopulationPKParameters | plotPopulationPKParameters |
| plotPopulationSensitivity | plotPopulationSensitivity |
| plotQualificationComparisonTimeProfile | plotQualificationComparisonTimeProfile |
| plotQualificationDDIs | plotQualificationDDIs |
| plotQualificationGOFs | plotQualificationGOFs |
| plotQualificationMeanTimeProfile | plotQualificationMeanTimeProfile |
| plotQualificationPKRatio | plotQualificationPKRatio |
| plotQualificationPopulationTimeProfile | plotQualificationPopulationTimeProfile |
| plotQualificationTimeProfiles | plotQualificationTimeProfiles |
| plotStatisticsFromPlan | plotStatisticsFromPlan |
| PlotTask | PlotTask |
| PopulationPlotTask | PopulationPlotTask |
| PopulationSensitivityAnalysisTask | PopulationSensitivityAnalysisTask |
| PopulationSimulationSet | PopulationSimulationSet |
| PopulationWorkflow | PopulationWorkflow |
| PopulationWorkflowTypes | PopulationWorkflowTypes |
| prettyCaption | prettyCaption |
| qualificationCatch | qualificationCatch |
| QualificationTask | QualificationTask |
| QualificationVersionInfo | QualificationVersionInfo |
| QualificationWorkflow | QualificationWorkflow |
| ratioBoxplot | ratioBoxplot |
| rbindPKParametersTables | rbindPKParametersTables |
| readObservedDataFile | readObservedDataFile |
| removeCommentsFromWorkflowContent | removeCommentsFromWorkflowContent |
| removeForbiddenLetters | removeForbiddenLetters |
| removeHighlight | removeHighlight |
| removeMissingValues | removeMissingValues |
| removeNegativeValues | removeNegativeValues |
| renderReport | renderReport |
| renderWordReport | renderWordReport |
| repeatableSampling | repeatableSampling |
| replaceInfWithNA | replaceInfWithNA |
| ReportingEngineInfo | ReportingEngineInfo |
| resetLogs | resetLogs |
| resetReport | resetReport |
| ResidualScales | ResidualScales |
| runParallelPopulationSimulation | runParallelPopulationSimulation |
| runParallelSensitivityAnalysis | runParallelSensitivityAnalysis |
| runPopulationSensitivityAnalysis | runPopulationSensitivityAnalysis |
| runSensitivity | runSensitivity |
| saveFigure | saveFigure |
| saveLogs | saveLogs |
| saveLogsToJson | saveLogsToJson |
| saveTaskResults | saveTaskResults |
| sectionsAsDataFrame | sectionsAsDataFrame |
| SensitivityAnalysisSettings | SensitivityAnalysisSettings |
| SensitivityAnalysisTask | SensitivityAnalysisTask |
| SensitivityPlotSettings | SensitivityPlotSettings |
| setDefaultAutoAxisLimitMargin | setDefaultAutoAxisLimitMargin |
| setDefaultBins | setDefaultBins |
| setDefaultMCRandomSeed | setDefaultMCRandomSeed |
| setDefaultMCRepetitions | setDefaultMCRepetitions |
| setDefaultNumericFormat | setDefaultNumericFormat |
| setDefaultPlotFormat | setDefaultPlotFormat |
| setDefaultStairstep | setDefaultStairstep |
| setDefaultTheme | setDefaultTheme |
| setDefaultThemeFromJson | setDefaultThemeFromJson |
| setDefaultTimeProfileStatistics | setDefaultTimeProfileStatistics |
| setLogFolder | setLogFolder |
| setPlotFormat | setPlotFormat |
| setQuadraticDimension | setQuadraticDimension |
| setSimulationDescriptor | setSimulationDescriptor |
| setWatermarkConfiguration | setWatermarkConfiguration |
| setWorkflowParameterDisplayPaths | setWorkflowParameterDisplayPaths |
| setWorkflowParameterDisplayPathsFromFile | setWorkflowParameterDisplayPathsFromFile |
| setXParametersForDemogrpahyPlot | setXParametersForDemogrpahyPlot |
| setXParametersForPKParametersPlot | setXParametersForPKParametersPlot |
| setYParametersForDemogrpahyPlot | setYParametersForDemogrpahyPlot |
| setYParametersForPKParametersPlot | setYParametersForPKParametersPlot |
| showLogMessages | showLogMessages |
| simulateModel | simulateModel |
| simulateModelForPopulation | simulateModelForPopulation |
| simulateModelOnCore | simulateModelOnCore |
| simulateModelParallel | simulateModelParallel |
| simulateWorkflowModels | simulateWorkflowModels |
| SimulationCodeIdentifiers | SimulationCodeIdentifiers |
| SimulationSet | SimulationSet |
| SimulationSettings | SimulationSettings |
| SimulationStructure | SimulationStructure |
| SimulationTask | SimulationTask |
| StandardExcelSheetNames | StandardExcelSheetNames |
| StandardPlotTasks | StandardPlotTasks |
| StandardSimulationTasks | StandardSimulationTasks |
| startQualificationRunner | startQualificationRunner |
| StatisticsTypes | StatisticsTypes |
| StudyDesign | StudyDesign |
| StudyDesignTarget | StudyDesignTarget |
| Task | Task |
| TaskResults | TaskResults |
| TaskSettings | TaskSettings |
| tic | tic |
| tlfLinetype | tlfLinetype |
| tlfScale | tlfScale |
| tlfShape | tlfShape |
| translateDataSelection | translateDataSelection |
| trimFileName | trimFileName |
| updateAxesMargin | updateAxesMargin |
| updateFigureNumbers | updateFigureNumbers |
| updateIndividualParametersOnCores | updateIndividualParametersOnCores |
| updatePlotAxes | updatePlotAxes |
| updatePlotConfigurationTimeTicks | updatePlotConfigurationTimeTicks |
| updatePlotDimensions | updatePlotDimensions |
| updateQualificationTimeProfilePlotConfiguration | updateQualificationTimeProfilePlotConfiguration |
| updateSimulationIndividualParameters | updateSimulationIndividualParameters |
| updateTableNumbers | updateTableNumbers |
| updateTargetValues | updateTargetValues |
| updateVpcPlotColor | updateVpcPlotColor |
| updateWatermarkDimensions | updateWatermarkDimensions |
| UserDefPKParametersOptionalSettings | UserDefPKParametersOptionalSettings |
| validateDataSource | Check the consistency between observed data and its... |
| verifyAnyPreviousFilesRemoved | verifyAnyPreviousFilesRemoved |
| verifyPartialResultsExported | verifyPartialResultsExported |
| verifySensitivityAnalysisRunSuccessful | verifySensitivityAnalysisRunSuccessful |
| verifySimulationRunSuccessful | verifySimulationRunSuccessful |
| vpcParameterPlot | vpcParameterPlot |
| Workflow | Workflow |
| WorkflowCodeIdentifiers | WorkflowCodeIdentifiers |
| WorkflowMandatoryVariables | WorkflowMandatoryVariables |
