reEnv: reEnv

In Open-Systems-Pharmacology/OSPSuite.ReportingEngine: R package to create reports for the Open Systems Pharmacology models

reEnv

Description

Environment that holds various global variables and settings for the RE library. It is not exported and should not be directly manipulated by other packages.

Usage

reEnv

Format

An object of class environment of length 39.

Fields

packageName

Name of the package. This will be used to retrieve information on the package at run time.

log

Logging object defining how to record log messages

defaultLogPrint

List of logical values indicating whether to print log messages on console

formatNumericsDigits

Number of digits to display for numeric values in reports

formatNumericsScientific

Logical value indicating whether to use scientific notation for numeric values in reports

defaultBins

Default number of bins to use in histograms

binUsingQuantiles

Logical value indicating whether splitting method for bins TRUE uses same number of points in bins through quantiles FALSE uses same interval ranges

defaultStairstep

Logical value indicating whether to use stairstep lines in range plots

defaultSimulationSetDescriptor

Default descriptor for simulation sets to include in reports

maximalParametersPerSensitivityPlot

Maximum number of parameters to include in a sensitivity plot

maxWidthPerParameter

Maximum number of characters allowed before adding line breaks in sensitivity plot parameter captions.

maxLinesPerParameter

Maximum number of lines allowed when line breaks need to be included in sensitivity plot parameter captions.

maxWidthPerLegendCaption

Maximum number of characters allowed before adding line breaks in legend captions.

maxLinesPerLegendCaption

Maximum number of lines allowed when line breaks need to be included in legend captions.

autoAxisLimitMargin

For DDI Ratio plots, value of the margin to add to the limits of the axis when left undefined

blankLinesBetweenArtifacts

Default number of line breaks to include in reports after inclusion of artifact

fontScaleFactor

Arbitrary scale factor for font size when exporting plot as png to render prettier captions

workflowWatermarkMessage

Default watermark message to print when system is not validated

residualsHistogramLabel

Default ylabel in goodness of fit residuals histogram plots

demographyHistogramLabel

Default ylabel in demography histogram plots

residualsQQLabel

Default ylabel in goodness of fit QQ-plots

referenceColor

Color of reference simulationSet in plots for Population Workflows

referenceFill

Fill color of reference simulationSet in plots for Population Workflows

defaultErrorbarCapSize

Default size of the error bar caps in the plots

defaultSimulationNumberOfCores

default numberOfCores for simulation

defaultSensitivityAnalysisNumberOfCores

default numberOfCores for sensitivity analysis

defaultVariationRange

default parameter variation range for sensitivity analysis

defaultQuantileVec

default quantiles for population sensitivity analysis

defaultMaxSimulationsPerCore

Default value for a scale factor used in a parallel simulation. The product of this scale factor and the number of allowable cores (allowedCores) sets the maximum number of simulations that may be run on one core.

defaultMCRandomSeed

Default Random Seed for Monte Carlo sampling when calculating PK Ratios in population workflows

defaultMCRepetitions

Default number of repetitions for Monte Carlo sampling when calculating PK Ratios in population workflows

defaultPKParametersHeader

Default header for PK parameters summary tables in reports

pkRatioDictionary

Dictionary of column names for PK Ratio tables

ddiRatioListColumnMappings

Dictionary of column names for DDI Ratio tables

ddiRatioSubsetsDictionary

Dictionary of sub-sections names for DDI Ratios

theme

A Theme object from the {tlf} package defining default properties of the figures

defaultPlotFormat

List of default format when exporting plots

defaultTimeProfileStatistics

A list of functions and labels defining the summary statistics and captions for population time profiles

Open-Systems-Pharmacology/OSPSuite.ReportingEngine documentation built on April 13, 2025, 10:37 a.m.