R/Trait.r

In OpenSILEX/opensilexClientToolsR: R Package Client for OpenSilex API

# OpenSilex API
#
# No description provided (generated by Swagger Codegen https://github.com/swagger-api/swagger-codegen)
#
# OpenAPI spec version: 1.0.0-rc+2
# 
# Generated by: https://github.com/swagger-api/swagger-codegen.git


#' Trait Class
#'
#' @field alternativeAbbreviations 
#' @field attribute 
#' @field description 
#' @field entity 
#' @field mainAbbreviation 
#' @field name 
#' @field ontologyReference 
#' @field status 
#' @field synonyms 
#' @field traitDbId 
#' @field traitName 
#' @field xref 
#' @field class 
#'
#' @importFrom R6 R6Class
#' @importFrom jsonlite fromJSON toJSON
#' @export
Trait <- R6::R6Class(
  'Trait',
  public = list(
    `alternativeAbbreviations` = NULL,
    `attribute` = NULL,
    `description` = NULL,
    `entity` = NULL,
    `mainAbbreviation` = NULL,
    `name` = NULL,
    `ontologyReference` = NULL,
    `status` = NULL,
    `synonyms` = NULL,
    `traitDbId` = NULL,
    `traitName` = NULL,
    `xref` = NULL,
    `class` = NULL,
    initialize = function(`alternativeAbbreviations`, `attribute`, `description`, `entity`, `mainAbbreviation`, `name`, `ontologyReference`, `status`, `synonyms`, `traitDbId`, `traitName`, `xref`, `class`){
      if (!missing(`alternativeAbbreviations`)) {
        stopifnot(is.list(`alternativeAbbreviations`), length(`alternativeAbbreviations`) != 0)
        lapply(`alternativeAbbreviations`, function(x) stopifnot(is.character(x)))
        self$`alternativeAbbreviations` <- `alternativeAbbreviations`
      }
      if (!missing(`attribute`)) {
        stopifnot(is.character(`attribute`), length(`attribute`) == 1)
        self$`attribute` <- `attribute`
      }
      if (!missing(`description`)) {
        stopifnot(is.character(`description`), length(`description`) == 1)
        self$`description` <- `description`
      }
      if (!missing(`entity`)) {
        stopifnot(is.character(`entity`), length(`entity`) == 1)
        self$`entity` <- `entity`
      }
      if (!missing(`mainAbbreviation`)) {
        stopifnot(is.character(`mainAbbreviation`), length(`mainAbbreviation`) == 1)
        self$`mainAbbreviation` <- `mainAbbreviation`
      }
      if (!missing(`name`)) {
        stopifnot(is.character(`name`), length(`name`) == 1)
        self$`name` <- `name`
      }
      if (!missing(`ontologyReference`)) {
        stopifnot(R6::is.R6(`ontologyReference`))
        self$`ontologyReference` <- `ontologyReference`
      }
      if (!missing(`status`)) {
        stopifnot(is.character(`status`), length(`status`) == 1)
        self$`status` <- `status`
      }
      if (!missing(`synonyms`)) {
        stopifnot(is.list(`synonyms`), length(`synonyms`) != 0)
        lapply(`synonyms`, function(x) stopifnot(is.character(x)))
        self$`synonyms` <- `synonyms`
      }
      if (!missing(`traitDbId`)) {
        stopifnot(is.character(`traitDbId`), length(`traitDbId`) == 1)
        self$`traitDbId` <- `traitDbId`
      }
      if (!missing(`traitName`)) {
        stopifnot(is.character(`traitName`), length(`traitName`) == 1)
        self$`traitName` <- `traitName`
      }
      if (!missing(`xref`)) {
        stopifnot(is.character(`xref`), length(`xref`) == 1)
        self$`xref` <- `xref`
      }
      if (!missing(`class`)) {
        stopifnot(is.character(`class`), length(`class`) == 1)
        self$`class` <- `class`
      }
    },
    toJSON = function() {
      TraitObject <- list()
      if (!is.null(self$`alternativeAbbreviations`)) {
        TraitObject[['alternativeAbbreviations']] <- self$`alternativeAbbreviations`
      }
      if (!is.null(self$`attribute`)) {
        TraitObject[['attribute']] <- self$`attribute`
      }
      if (!is.null(self$`description`)) {
        TraitObject[['description']] <- self$`description`
      }
      if (!is.null(self$`entity`)) {
        TraitObject[['entity']] <- self$`entity`
      }
      if (!is.null(self$`mainAbbreviation`)) {
        TraitObject[['mainAbbreviation']] <- self$`mainAbbreviation`
      }
      if (!is.null(self$`name`)) {
        TraitObject[['name']] <- self$`name`
      }
      if (!is.null(self$`ontologyReference`)) {
        TraitObject[['ontologyReference']] <- self$`ontologyReference`$toJSON()
      }
      if (!is.null(self$`status`)) {
        TraitObject[['status']] <- self$`status`
      }
      if (!is.null(self$`synonyms`)) {
        TraitObject[['synonyms']] <- self$`synonyms`
      }
      if (!is.null(self$`traitDbId`)) {
        TraitObject[['traitDbId']] <- self$`traitDbId`
      }
      if (!is.null(self$`traitName`)) {
        TraitObject[['traitName']] <- self$`traitName`
      }
      if (!is.null(self$`xref`)) {
        TraitObject[['xref']] <- self$`xref`
      }
      if (!is.null(self$`class`)) {
        TraitObject[['class']] <- self$`class`
      }

      TraitObject
    },
    fromJSON = function(TraitJson) {
      TraitObject <- jsonlite::fromJSON(TraitJson)
      if (!is.null(TraitObject$`alternativeAbbreviations`)) {
        self$`alternativeAbbreviations` <- TraitObject$`alternativeAbbreviations`
      }
      if (!is.null(TraitObject$`attribute`)) {
        self$`attribute` <- TraitObject$`attribute`
      }
      if (!is.null(TraitObject$`description`)) {
        self$`description` <- TraitObject$`description`
      }
      if (!is.null(TraitObject$`entity`)) {
        self$`entity` <- TraitObject$`entity`
      }
      if (!is.null(TraitObject$`mainAbbreviation`)) {
        self$`mainAbbreviation` <- TraitObject$`mainAbbreviation`
      }
      if (!is.null(TraitObject$`name`)) {
        self$`name` <- TraitObject$`name`
      }
      if (!is.null(TraitObject$`ontologyReference`)) {
        ontologyReferenceObject <- OntologyReference$new()
        ontologyReferenceObject$fromJSON(jsonlite::toJSON(TraitObject$ontologyReference, auto_unbox = TRUE, null = "null"))
        self$`ontologyReference` <- ontologyReferenceObject
      }
      if (!is.null(TraitObject$`status`)) {
        self$`status` <- TraitObject$`status`
      }
      if (!is.null(TraitObject$`synonyms`)) {
        self$`synonyms` <- TraitObject$`synonyms`
      }
      if (!is.null(TraitObject$`traitDbId`)) {
        self$`traitDbId` <- TraitObject$`traitDbId`
      }
      if (!is.null(TraitObject$`traitName`)) {
        self$`traitName` <- TraitObject$`traitName`
      }
      if (!is.null(TraitObject$`xref`)) {
        self$`xref` <- TraitObject$`xref`
      }
      if (!is.null(TraitObject$`class`)) {
        self$`class` <- TraitObject$`class`
      }
    },
    fromJSONObject = function(TraitObject) {
      if (!is.null(TraitObject$`alternativeAbbreviations`)) {
        self$`alternativeAbbreviations` <- TraitObject$`alternativeAbbreviations`
      }
      if (!is.null(TraitObject$`attribute`)) {
        self$`attribute` <- TraitObject$`attribute`
      }
      if (!is.null(TraitObject$`description`)) {
        self$`description` <- TraitObject$`description`
      }
      if (!is.null(TraitObject$`entity`)) {
        self$`entity` <- TraitObject$`entity`
      }
      if (!is.null(TraitObject$`mainAbbreviation`)) {
        self$`mainAbbreviation` <- TraitObject$`mainAbbreviation`
      }
      if (!is.null(TraitObject$`name`)) {
        self$`name` <- TraitObject$`name`
      }
      if (!is.null(TraitObject$`ontologyReference`)) {
        ontologyReferenceObject <- OntologyReference$new()
        ontologyReferenceObject$fromJSON(jsonlite::toJSON(TraitObject$ontologyReference, auto_unbox = TRUE, null = "null"))
        self$`ontologyReference` <- ontologyReferenceObject
      }
      if (!is.null(TraitObject$`status`)) {
        self$`status` <- TraitObject$`status`
      }
      if (!is.null(TraitObject$`synonyms`)) {
        self$`synonyms` <- TraitObject$`synonyms`
      }
      if (!is.null(TraitObject$`traitDbId`)) {
        self$`traitDbId` <- TraitObject$`traitDbId`
      }
      if (!is.null(TraitObject$`traitName`)) {
        self$`traitName` <- TraitObject$`traitName`
      }
      if (!is.null(TraitObject$`xref`)) {
        self$`xref` <- TraitObject$`xref`
      }
      if (!is.null(TraitObject$`class`)) {
        self$`class` <- TraitObject$`class`
      }
    },
    toJSONString = function() {
       sprintf(
        '{
           "alternativeAbbreviations": [%s],
           "attribute": %s,
           "description": %s,
           "entity": %s,
           "mainAbbreviation": %s,
           "name": %s,
           "ontologyReference": %s,
           "status": %s,
           "synonyms": [%s],
           "traitDbId": %s,
           "traitName": %s,
           "xref": %s,
           "class": %s
        }',
        ifelse(is.null(self$`alternativeAbbreviations`) || length(self$`alternativeAbbreviations`) == 0, "" ,lapply(self$`alternativeAbbreviations`, function(x) paste(paste0('"', x, '"'), sep=","))),
        ifelse(is.null(self$`attribute`), "null",jsonlite::toJSON(self$`attribute`,auto_unbox=TRUE, null = "null")),
        ifelse(is.null(self$`description`), "null",jsonlite::toJSON(self$`description`,auto_unbox=TRUE, null = "null")),
        ifelse(is.null(self$`entity`), "null",jsonlite::toJSON(self$`entity`,auto_unbox=TRUE, null = "null")),
        ifelse(is.null(self$`mainAbbreviation`), "null",jsonlite::toJSON(self$`mainAbbreviation`,auto_unbox=TRUE, null = "null")),
        ifelse(is.null(self$`name`), "null",jsonlite::toJSON(self$`name`,auto_unbox=TRUE, null = "null")),
        jsonlite::toJSON(self$`ontologyReference`$toJSON(),auto_unbox=TRUE, null = "null"),
        ifelse(is.null(self$`status`), "null",jsonlite::toJSON(self$`status`,auto_unbox=TRUE, null = "null")),
        ifelse(is.null(self$`synonyms`) || length(self$`synonyms`) == 0, "" ,lapply(self$`synonyms`, function(x) paste(paste0('"', x, '"'), sep=","))),
        ifelse(is.null(self$`traitDbId`), "null",jsonlite::toJSON(self$`traitDbId`,auto_unbox=TRUE, null = "null")),
        ifelse(is.null(self$`traitName`), "null",jsonlite::toJSON(self$`traitName`,auto_unbox=TRUE, null = "null")),
        ifelse(is.null(self$`xref`), "null",jsonlite::toJSON(self$`xref`,auto_unbox=TRUE, null = "null")),
        ifelse(is.null(self$`class`), "null",jsonlite::toJSON(self$`class`,auto_unbox=TRUE, null = "null"))
      )
    },
    fromJSONString = function(TraitJson) {
      TraitObject <- jsonlite::fromJSON(TraitJson)
      self$`alternativeAbbreviations` <- TraitObject$`alternativeAbbreviations`
      self$`attribute` <- TraitObject$`attribute`
      self$`description` <- TraitObject$`description`
      self$`entity` <- TraitObject$`entity`
      self$`mainAbbreviation` <- TraitObject$`mainAbbreviation`
      self$`name` <- TraitObject$`name`
      OntologyReferenceObject <- OntologyReference$new()
      self$`ontologyReference` <- OntologyReferenceObject$fromJSON(jsonlite::toJSON(TraitObject$ontologyReference, auto_unbox = TRUE))
      self$`status` <- TraitObject$`status`
      self$`synonyms` <- TraitObject$`synonyms`
      self$`traitDbId` <- TraitObject$`traitDbId`
      self$`traitName` <- TraitObject$`traitName`
      self$`xref` <- TraitObject$`xref`
      self$`class` <- TraitObject$`class`
    }
  )
)