metadata_utilities: Manipulate and interpret the metadata of a REDCap project

In OuhscBbmc/REDCapR: Interaction Between R and REDCap

Manipulate and interpret the metadata of a REDCap project

Description

A collection of functions that assists handling REDCap project metadata.

Usage

regex_named_captures(pattern, text, perl = TRUE)

checkbox_choices(select_choices)

Arguments

pattern	The regular expression pattern. Required.
text	The text to apply the regex against. Required.
perl	Indicates if perl-compatible regexps should be used. Default is TRUE. Optional.
select_choices	The text containing the choices that should be parsed to determine the id and label values. Required.

Details

The regex_named_captures() function is general, and not specific to REDCap; it accepts any arbitrary regular expression. It returns a tibble::tibble() with as many columns as named matches.

The checkbox_choices() function is specialized, and accommodates the "select choices" for a single REDCap checkbox group (where multiple boxes can be selected). It returns a tibble::tibble() with two columns, one for the numeric id and one for the text label.

The parse will probably fail if a label contains a pipe (i.e., |), since that the delimiter REDCap uses to separate choices presented to the user.

Value

Currently, a tibble::tibble() is returned a row for each match, and a column for each named group within a match. For the retrieve_checkbox_choices() function, the columns will be.

• id: The numeric value assigned to each choice (in the data dictionary).

• label: The label assigned to each choice (in the data dictionary).

Author(s)

Will Beasley

References

See the official documentation for permissible characters in a checkbox label. I'm bluffing here, because I don't know where this is located. If you know, please tell me.

Examples

# The weird ranges are to avoid the pipe character;
#   PCRE doesn't support character negation.
pattern_boxes <- "(?<=\\A| \\| )(?<id>\\d{1,}), (?<label>[\x20-\x7B\x7D-\x7E]{1,})(?= \\| |\\Z)"

choices_1 <- paste0(
  "1, American Indian/Alaska Native | ",
  "2, Asian | ",
  "3, Native Hawaiian or Other Pacific Islander | ",
  "4, Black or African American | ",
  "5, White | ",
  "6, Unknown / Not Reported"
)

# This calls the general function, and requires the correct regex pattern.
REDCapR::regex_named_captures(pattern=pattern_boxes, text=choices_1)

# This function is designed specifically for the checkbox values.
REDCapR::checkbox_choices(select_choices=choices_1)

## Not run: 
uri         <- "https://bbmc.ouhsc.edu/redcap/api/"
token       <- "9A81268476645C4E5F03428B8AC3AA7B"

ds_metadata <- redcap_metadata_read(uri, token)$data
choices_2   <- ds_metadata[ds_metadata$field_name == "race", ]$select_choices_or_calculations

REDCapR::regex_named_captures(pattern = pattern_boxes, text = choices_2)

## End(Not run)

path_3     <- system.file(package = "REDCapR", "test-data/project-simple/metadata.csv")
ds_metadata_3  <- read.csv(path_3)
choices_3  <- ds_metadata_3[ds_metadata_3$field_name=="race", "select_choices_or_calculations"]
REDCapR::regex_named_captures(pattern = pattern_boxes, text = choices_3)

OuhscBbmc/REDCapR documentation built on Jan. 31, 2024, 8:30 p.m.