inst/README.md
In PMBio/cardelino: Clone Identification from Single Cell Data
inst
This folder contains the files:
CITATION: Citation information for cardelino.cardelino_image_attribution.txt: Attribution information for the photo for a goldfinch used in the package sticker.cardelino_sticker.png: The cardelino's hex sticker.cardelino_med.jpg: The photo of a goldfinch used in cardelino's sticker.
It also contains the folder extdata, which contains extra data used in the package's vignettes and examples.
Specifically, extdata contains the files:
canopy_results.coveraged.rds: Canopy tree results. Used in vignette-cloneid.Rmd.cells.donorid.vcf.gz: A VCF data file from cells. Used in the examples of functions in read_data.R.cellSNP.cells.vcf.gz: A VCF data file created using cellSNP. Used in the examples of functions in read_data.R.donors.donorid.vcf.gz: A VCF data file from a donor. Used the in the examples of get_snp_matrices().passed_ad.mtx: AD matrix created using MQUAD. Used in the "Clone ID on mitochondrial variations" section of vignette-cloneid.Rmd.passed_dp.mtx: DP matrix created using MQUAD. Used in the "Clone ID on mitochondrial variations" section of vignette-cloneid.Rmd.passed_variant_names.txt: Variant names for the AD and DP matrices. Used in the "Clone ID on mitochondrial variations" section of vignette-cloneid.Rmd.
PMBio/cardelino documentation built on Nov. 21, 2022, 4:52 a.m.
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inst
This folder contains the files:
CITATION: Citation information for cardelino.cardelino_image_attribution.txt: Attribution information for the photo for a goldfinch used in the package sticker.cardelino_sticker.png: The cardelino's hex sticker.cardelino_med.jpg: The photo of a goldfinch used in cardelino's sticker.
It also contains the folder extdata, which contains extra data used in the package's vignettes and examples.
Specifically, extdata contains the files:
canopy_results.coveraged.rds: Canopy tree results. Used invignette-cloneid.Rmd.cells.donorid.vcf.gz: A VCF data file from cells. Used in the examples of functions inread_data.R.cellSNP.cells.vcf.gz: A VCF data file created using cellSNP. Used in the examples of functions inread_data.R.donors.donorid.vcf.gz: A VCF data file from a donor. Used the in the examples ofget_snp_matrices().passed_ad.mtx: AD matrix created using MQUAD. Used in the "Clone ID on mitochondrial variations" section ofvignette-cloneid.Rmd.passed_dp.mtx: DP matrix created using MQUAD. Used in the "Clone ID on mitochondrial variations" section ofvignette-cloneid.Rmd.passed_variant_names.txt: Variant names for the AD and DP matrices. Used in the "Clone ID on mitochondrial variations" section ofvignette-cloneid.Rmd.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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