make_id_to_quant_scan_link_table: Finding Links from PNNL's DMS

In PNNL-Comp-Mass-Spec/PNNL.DMS.utils: Tools for accessing PNNL's Data Management System

Finding Links from PNNL's DMS

Description

Link ID scans to quantification scans. * 'make_id_to_quant_scan_link_table()': Link ID scans to quant scans for multiple datasets. * 'make_id_to_quant_scan_link_table_for_dataset()': Link ID scans to quant scans for a single dataset.

Usage

make_id_to_quant_scan_link_table(
  scanStats,
  idScanPattern = "ms2",
  quantScanPattern = "ms3",
  threshold = NULL
)

make_id_to_quant_scan_link_table_for_dataset(
  scanStats,
  quantScanPattern,
  idScanPattern,
  threshold = NULL
)

Arguments

scanStats
idScanPattern
quantScanPattern
threshold

Value

(data.table) with reporter ion intensities and other metrics

PNNL-Comp-Mass-Spec/PNNL.DMS.utils documentation built on Jan. 20, 2025, 9:10 a.m.