read_masic_data_from_DMS: Reading MASIC results from PNNL's DMS

In PNNL-Comp-Mass-Spec/PNNL.DMS.utils: Tools for accessing PNNL's Data Management System

Reading MASIC results from PNNL's DMS

Description

Reading MASIC results from PNNL's DMS

Usage

read_masic_data_from_DMS(
  data_package_num,
  interference_score = FALSE,
  idScanPattern = "ms2",
  quantScanPattern = "ms2"
)

Arguments

data_package_num	(numeric or character vector) containing Data Package ID(s) located in DMS.
interference_score	(logical) read interference score. Default is FALSE.
quantScanPattern	Ion fragmentation method used to produce the scan used for peptide quantification
idscanpattern	Ion fragmentation method used to produce the scan used for peptide identification

Value

(data.frame) with reporter ion intensities and other metrics

Examples

if (is_PNNL_DMS_connection_successful()) {
test <- read_masic_data_from_DMS(4970)
}

PNNL-Comp-Mass-Spec/PNNL.DMS.utils documentation built on Jan. 20, 2025, 9:10 a.m.