|AlignRefAndRead||Align a read and a reference window. Both the forward and...|
|AlnsToDataFrame||Takes a list of pairwise alignments and generates a data...|
|getAlignments||Get an alignment of a CCS read to the reference as well as...|
|getRefPosition||Determine the reference position in a multiple sequence...|
|plotMSA||Print a PDF of the MSA in a dataframe returned by the...|
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