AlnsToDataFrame: Takes a list of pairwise alignments and generates a data...
In PacificBiosciences/ccsviewr: Examine subreads from a CCS alignment view.
Description
Usage
Arguments
Value
Description
Takes a list of pairwise alignments and generates a data frame with the MSA
sequence. The reference sequence is determined from the first alignment in
the list. All reads are expanded by adding enough inserts to account for all
of them.
Usage
1
AlnsToDataFrame(alns)
Arguments
ref
A string that is the reference window we are aligning to.
read
A list with elements name/read.
Value
Returns a list with the aligned read, ref and score
PacificBiosciences/ccsviewr documentation built on May 7, 2019, 11:55 p.m.
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Description Usage Arguments Value
Description
Takes a list of pairwise alignments and generates a data frame with the MSA sequence. The reference sequence is determined from the first alignment in the list. All reads are expanded by adding enough inserts to account for all of them.
Usage
1 | AlnsToDataFrame(alns)
|
Arguments
ref |
A string that is the reference window we are aligning to. |
read |
A list with elements name/read. |
Value
Returns a list with the aligned read, ref and score
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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