chkClass | Helper function for verifying arguments |
chkPng | Check the file ends as a png |
dictToResolvedToolContract | Convert a dict to a Resolved Task Contract |
dToToolContract | convert the json to ToolContract instance |
examplefastaReport | Example Task for Testing with emitting a report |
examplefilterFastaTask | Example Task for testing inputs = [FileTypes.Fasta] outputs =... |
FileType-class | File Type |
FileTypes | Registry for all the PacBio defined file types |
getExamplePlotGroup | Example Plot Group |
getParser | Fundamental argument parser to emit tool contracts and Run... |
getPBColorScale | Get the default color scheme, adding more colors if they are... |
getPBFillScale | Get the default color scheme for fills, adding more colors if... |
getPBTheme | Returns a default there for making plots. |
InputFileType-class | Tool Contract Task Input File Type |
loadJsonFromFile | General func to load JSON from a file |
loadReseqConditionsFromPath | Load Condition |
loadResolvedToolContractFromPath | Load a Resolved Tool contract from json file |
loadToolContractFromPath | Load Tool Contract from Path |
mainRegisteryMainArgs | CLI entry point. Parses CLI args and calls registery Runner |
OutputFileType-class | Tool Contract Task Input File Type |
pbreporter | Sugar object to make it easier to generate reports. |
pbReseqJob | Create a resequencing job tool wrapper using a function that... |
printConditionCSV | Convert a resolved condition JSON into a CSV for resubmission... |
RegisteredToolContract-class | Registered Tool Contract |
ReseqCondition-class | Model For Reseq Condition |
ReseqConditions-class | Model for ReseqConditions |
ResolvedToolContract-class | Resolved Tool Contract |
ResolvedToolContractTask-class | Resolved Tool Contract Task |
ResourceTypes | Symbol types used in Tool Contract and Resolved Tool... |
SymbolTypes | Symbol types used in Tool Contract and Resolved Tool... |
TaskTypes | PacBio Defined task types |
ToolContract-class | Tool Contract |
ToolContractTask-class | Tool Contract |
toolContractToD | Convert Tool Contract into list/dict |
ToolDriver-class | Tool Driver has the driver exe and env (to be added) |
writeToolContract | Write Tool Contract to JSON file |
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