NEWS.md

In Pandora-IsoMemo/iso-app: Pandora & IsoMemo spatiotemporal modeling

DSSM 24.06.0

New Features

• replace rgeos::gCentroids() with sf::st_centroid() because of retired packages rgeos and rgdal (#228)
• Renaming of the Package
• R-CMD check workflow
• pkgdown Documentation

MpiIsoApp 24.05.7

Bug Fixes

• LocateR: fix pch value when creating a probability map which caused a warning (#224)
• Saved maps: fix issue when thumbnail was missing in former uploaded saved maps

MpiIsoApp 24.05.6

New Features

• Saved maps:
• option to download a zip file with all plots in a chosen format (#2)
• removing option to download saved maps with the current model object, since files become too large and upload takes too long

MpiIsoApp 24.05.5

New Features

• Saved maps: export and import of saved maps is now included within the features to down- and upload models (#2)
• optionally, the list of saved models can be downloaded
• upload checks for a list of saved maps and loads it, if it is available

MpiIsoApp 24.05.4

Bug Fixes

• fix issue with warning whenever using a bayesian model (#199)

MpiIsoApp 24.05.3

Bug Fixes

• fix for the spread model which was not running if two dates were specified (#218)
• fixes the case when we have missing longitude or latitude data in the data set (#219)

MpiIsoApp 24.05.2

New Features

• Interactive Map:
• possibility of selecting a specific point colour when no point colour variable was selected ("Fixed" point colour) (#174)
• button to apply settings for the style of points

MpiIsoApp 24.05.1

New Features

• define the center of coordinates before modelling in the Modeling tabs. This shifts data to respective longitudes (#196)
• if "0th meridian" longitudes are transposed to the range (-180, 180)
• if "180th meridian" longitudes are transposed to the range (0, 360)
• a vignette was added to the package describing features for the processing of coordinate data (#196)

MpiIsoApp 24.05.0

New Features

• OperatoR tab:
• option to create contour maps from saved maps (#202)

MpiIsoApp 24.04.1

Bug Fixes

• fix logic to filter location marks for time slices (#200)

MpiIsoApp 24.04.0

New Features

• preview of input data in modeling tabs

Bug Fixes

• fix crashing of map plotting when time is out of range (#207)
• fix wrong color data for centroids (#205)

MpiIsoApp 23.12.1

New Features

• New option to create elevation maps in OperatoR as well as custom maps
• Option to weight by map in LocatoR including options (e.g. weight by altitude/elevation map)
• Create custom map from x-y-z data from file in OperatoR
• Option to create probability maps in LocateR independently

MpiIsoApp 23.12.0

New Features

• Import of models from Pandora:
• display of "About" information that is associated to a selected Pandora Repository

Bug Fixes

• Import of models from Pandora:
• an error message occurred when trying to load a model from pandora.
• fix: adding the missing download of the zip file from the url before unpacking the zip

MpiIsoApp 23.10.3

Bug Fixes

• fix issue with missing location marks in TimeR and TimeRKernel (#193)

MpiIsoApp 23.10.2

Bug Fixes

• prevent display of data on different "leaflets" by adding the option to choose an Atlantic or a Pacific map center (#173)

MpiIsoApp 23.10.0

New Features

• Create new map option moved to OperatoR tab
• Batch option to provide multiple points to create new map (csv or excel file for upload)
• Option for specific average radius for each row in batch input for operatoR

MpiIsoApp 23.09.1

New Features

• Import of models:
• option to import models from Pandora platform

MpiIsoApp 23.07.1

New Features

• Missing Values Imputation AssignR: Multiple imputation for AssignR using the "mice" package

MpiIsoApp 23.06.4

New Features

• Modeling tabs: The text for center point estimates
• now contains the underlying grid length (#169)
• can be hidden again by removing inputs for latitude and longitude

Updates

• removed recalculation of predictions when changing the latitude or longitude for center estimates

MpiIsoApp 23.06.3

Bug Fixes

• Export of time series:
• fixes export of pdf files together with a .gif (#107)
• now .gif files are always based on jpeg files, for .gif no conversion from pdf is required anymore

MpiIsoApp 23.06.2

New Features

• Tab Data: new input to select an ontological schema, e.g. the "IsoMemo" schema (#102)

MpiIsoApp 23.06.1

Updates

• add spinner to indicate that app is initializing
• optimize loading of tabs when initializing
• use DataTools 23.06.1 to fix issues with importing data without internet connection (#157)

MpiIsoApp 23.06.0

Bug Fixes

• Interactive Map:
• fix option to use a fixed point colour (#161)

MpiIsoApp 23.05.4

Updates

• option in KernelTimeR to choose between temporal group or spatial cluster

MpiIsoApp 23.05.3

New Features

• Export of time series: optionally add a gif file or only export a gif (#107)

MpiIsoApp 23.05.2

New Features

• Interactive Map:
• map types are grouped by having borders or names (#133)
• option to add more maps from different providers: https://leaflet-extras.github.io/leaflet-providers/preview/

MpiIsoApp 23.05.1

Updates

• Interactive Map: add option "[Fixed]" for point size, colour and symbol (#13)

MpiIsoApp 23.04.3.3

Bug Fixes

• apply bug fix from main on beta (#142)

MpiIsoApp 23.04.3.2

Bug Fixes

• apply bug fix from main on beta (#122)

MpiIsoApp 23.04.3

Updates

• removing the calculation of clusters for unfiltered data
• renaming columns in the excel export
• renaming "Number of clusters (optional)" to "Possible range for clusters"
• increasing the maximum number of clusters from 20 to 50 for mclust
• add option to show spatial centroids

MpiIsoApp 23.04.2

New Features

• Interactive map:
• option to set the symbol dependent on values of a character column (#13)
• show/hide legends for size (if a variable is used) and symbols

Updates

• optimized behavior of updating data and show/hide legends on the interactive map

MpiIsoApp 23.04.1.10

Bug fixes

• fixes an error when trying to reach the API without internet connetcion (#157)

MpiIsoApp 23.04.1.7

Bug Fixes

• fix case if date columns are not numeric (#110)

MpiIsoApp 23.04.1.6

Bug Fixes

• add default API_BASE_URL (#142)

MpiIsoApp 23.04.1.5

Bug Fixes

• fix bug in conversion of lat/long when using import in modeling tabs (#122)

MpiIsoApp 23.04.1

New Features

• Model tabs: Option to load a model
• download a model (all user inputs, data and/or the model output) as a .zip file
• upload online models that are stored in github
• upload local models that were downloaded in a past session
• check if the model to be uploaded comes from the active tab

MpiIsoApp 23.03.6

New Features

• Adds mclust as new clustering option for KernelR and KernelTimeR
• Adds columns to excel for KernelTimeR: centroid full data, centroid sliced data, centroid temporal data

Bug Fixes

• Unifies colors for clustering map and clustering plot within KernelTimeR
• Fixing crash in mapSim, mapDiff and kernel plotting function after updates regarding categorical target/dependent variable

MpiIsoApp 23.03.5

Updates

• Show type of user created maps (#19)

MpiIsoApp 23.03.4

Updates

• Categorical target/dependent variable option for AverageR/TimeR models. This follows a 1vsall approach using logistic regression, which in the Bayesian case is performed using a Polya-Gamma latent variable during Gibbs-sampling (https://arxiv.org/abs/1205.0310)

MpiIsoApp 23.03.3

Updates

• Option to decide whether to keep the first or last duplicate row.

MpiIsoApp 23.03.2

Updates

• Option to set max number of characters to be displayed in the table.

MpiIsoApp 23.03.1

Updates

• Import Data module in the tab Query with SQL: confirm using GPT3 before option to upload a key

MpiIsoApp 23.02.4

Updates

• Import Data module in the tab Query with SQL: option to use GPT3 for creation of SQL queries

MpiIsoApp 23.02.3

Updates

• Option to decide if column with duplicate rows is added
• Option to ignore spaces during duplicate detection
• Option to specify a string that is used for duplicate detection

MpiIsoApp 23.02.2

Updates

• the Import Data module was now integrated into the modeling tabs AverageR, TimeR, SpreadR, KernelR, KernelTimeR, and AssignR (#91, PR #98)
• applicable when "Upload file" is selected under "Data source" in the left sidebar

MpiIsoApp 23.02.1

New features

• A new button "detect duplicates" has been added that opens a pop-up where duplicates can be detected and removed from the dataset.

MpiIsoApp 23.01.4.1

Bug Fixes

• inputs for latitude and longitude were falsely hidden for time plots in TimeR and KernelTimeR (#94)

MpiIsoApp 23.01.4

Updates

• when using Pandora skin:
• the Import Data module is now imported from the new package IsoAppTools (#91, PR 92)
• now changes of functionality
• all redundant code was removed

MpiIsoApp 23.01.3

New features

• when using Pandora skin, in Import Data:
• option to use SQL queries to prepare or combine data before import (#37, PR #89)
  • use in-memory tables and columns
  • provide and apply a query
  • preview and accept the result

Bug Fixes

• fixed bug when importing data with no numeric columns:
• data was not displayed because no lat/long columns were found

MpiIsoApp 23.01.2

New features

• under Saved/Create Maps tab (#19)
• option to add a square

• update of the UI

• fixed sidebars with auto scroll in all tabs (#4)

MpiIsoApp 23.01.1

New features

• interactive map:
• option to assign colour of symbol by selecting a certain data column (#13)
  • choose a colour palette
  • reverse colours
• option to assign size of symbol by selecting a certain data column (#13)
  • set a factor to adjust the size
  • if no column is selected, the factor sets the general point size
• option to adjust opacity

MpiIsoApp 22.12.4

New features

• when using Pandora skin, in Import Data:
• option to prepare data before import or merge
  • rename columns
  • join columns
  • split columns
  • delete columns
• option to merge two data tables before import (#37)
  • optionally select all common columns
  • specify the merge operation
  • apply the merge for reviewing and error checking
  • accept the merged file to finally import it into the app
• checks for correct column names in file imports
• update column names of files if naming conflicts
• new tests

Updates

• disable accept button(s) by default in Import Data

MpiIsoApp 22.12.3.1

Bug Fixes

• inputs for latitude and longitude were falsely hidden for time plots in TimeR and KernelTimeR (#94)

MpiIsoApp 22.12.3

Updates

• export of plots after modelling: hide option to create a time series for Time Course plot type (#8)

Bug Fixes

• fix naming issue when data contains columns exactly named "latitude" or "longitude"
• columns will be renamed if coordinate conversion fails

MpiIsoApp 22.12.2

Updates

• add notification if conversion of lng/lat was successful (#67)

Bug Fixes

• fix reset of lng/lat columns when switching coord formats

MpiIsoApp 22.12.1

Bug Fixes

• fix export of time plot as time series in TimeR and KernelTimeR (#8)

MpiIsoApp 22.11.1

Updates

• extract z scale settings ("Estimation type", "Show estimates", Min/Max range, "Restrict range") into their own module
• new module zScale applied in the modelling tabs: AverageR, KernelR, TimeR, KernelTimeR, SpreadR, OperatoR, LocateR
• switch the title for min/max range dependent on the "Plot type"

Bug fixes

• fix update of min/max values after removing a restriction (min/max values had been overwritten before, that is, removing a restriction did not reset min/max values) (#27)
• remove duplicated re-rendering of the map when changing "Estimation type" or restricting the range
• update choices of "Estimation type" when switching the "Plot type" in TimeR since some types are not implemented for "Time course"
• debounce inputs for min/max range to prevent re-rendering of the map when typing min/max values

MpiIsoApp 22.10.3

Updates

• new UI to specify the section of maps of modelling tabs (AverageR, TimeR, SpreadR, KernelR, KernelTimeR, OperatorR, LocateR)
• dynamically use the buttons up, down, center, ...
• apply a button "Set (Time and) Map Section" to set
  • time (only for TimeR and KernelTimeR),
  • zoom in degrees of longitude, or
  • lat/long of upper left corner
• new modules that encapsulate the functionality behind the new UI
• applying the new modules in all modelling tabs and removing copy-paste code

Bug fixes

• removes the slow automatic updates for inputs of time and zoom (#8)

MpiIsoApp 22.10.2

Bug fixes

• fixing the point radius changing with latitude, now set radius in pixel (#44)

MpiIsoApp 22.10.1

New features

• specify the sheet of an xlsx/xls file in the import dialog
• new button "Center Map" in the Interactive map section that centers the map at the mean longitude and latitude of the displayed data

Enhancements

• for Pandora skin: set default Latitude and Longitude columns after data load if match was found (#67)
• note: the default format is "decimal degrees", here we still apply the check for numeric columns

Bug fixes

• fix failing of import of xlsx files with sheets (-> option to select the sheet)
• fix missing columns in the selection of Longitude and Latitude if Coordinate format was not equal "decimal degrees" (#62)
• fix in the removal of points on the interactive map after using filters (#63)

MpiIsoApp 22.09.3

New features

• export a time series of spatio-temporal-average plots in the selected file format condensed into a zip file

MpiIsoApp 22.09.2

New features

• option to adjust the format of the axes in time course plots (decimal places and number of labels)
• option to adjust the decimal places of the center estimates for mapType == "Map" or "Spread"

MpiIsoApp 22.09.1

Enhancements

• In the Modelling tab under TimeR and KernelTimeR: new (numeric) input field for the Time selection in addition to the slider input Time selection

MpiIsoApp 22.08.2.1

Updates

• text update of the modeling tab for the pandora / isomemo search app (#9)

MpiIsoApp 22.08.2

Enhancements

• when using Pandora skin: updates of the UI in the Import Data pop-up menu (#39)
• update label names in the maps tab (#48)

Bug fixes

• fixes in the modeling tab AssignR: (#46)

Pandora-IsoMemo/iso-app documentation built on July 4, 2024, 7:07 p.m.