plotMap: Plots map of a spatial average or spread model from...

In Pandora-IsoMemo/iso-app: Pandora & IsoMemo spatiotemporal modeling

Plots map of a spatial average or spread model from estimateMap() or estimateMapSpread() functions

Description

Plots map of a spatial average or spread model from estimateMap() or estimateMapSpread() functions

Usage

plotMap(
  model,
  IndSelect = NULL,
  estType = "Mean",
  estQuantile = 0.9,
  points = TRUE,
  pointSize = 1,
  StdErr = Inf,
  rangex = range(model$data$Longitude, na.rm = TRUE),
  rangey = range(model$data$Latitude, na.rm = TRUE),
  rangez = NULL,
  contourType = c("filled.contour", "contour"),
  limitz = NULL,
  resolution = 100,
  interior = TRUE,
  ncol = 10,
  colors = "RdYlGn",
  reverseColors = FALSE,
  colorsP = NULL,
  centerMap = "Europe",
  pointShape = 4,
  showScale = TRUE,
  textLabels = NULL,
  pointLabels = NULL,
  pointColLabels = NULL,
  fontSize = 11,
  showModel = TRUE,
  fontType = "sans",
  fontCol = "black",
  mask = FALSE,
  maskRadius = 100,
  pColor = "#000000",
  dataCenter = NULL,
  RadiusBatch = NULL,
  terrestrial = 1,
  grid = TRUE,
  arrow = TRUE,
  scale = TRUE,
  mapType = "Map",
  titleMain = TRUE,
  titleScale = TRUE,
  setAxisLabels = FALSE,
  mainLabel = "",
  yLabel = "Latitude",
  xLabel = "Longitude",
  northSize = 0.2,
  scalSize = 0.1,
  scaleX = 0,
  scaleY = 0.1,
  NorthX = 0.025,
  NorthY = 0.925,
  scLabel = "",
  AxisSize = 1,
  AxisLSize = 1,
  cluster = FALSE,
  clusterCol = "Set1",
  pointDat = NULL,
  MinMax = "Min",
  nMin = 3,
  minDist = 250,
  showMinOnMap = FALSE,
  OLat = NULL,
  OLong = NULL,
  DestLat = NULL,
  DestLong = NULL
)

Arguments

model	return object of spatial or spread model from estimateMap() or estimateMapSpread() functions
IndSelect	for categorical model: selected category; shifts between categories in the center
estType	one of "Mean", "SE" and "Quantile". defaults to "Mean"
estQuantile	quantile (only applicable if estType = "Quantile")
points	show points on map TRUE/FALSE
pointSize	point size (if points = TRUE)
StdErr	maximum standard error to which estimates are displayed
rangex	range of longitude values (x axis limits)
rangey	range of latitude values (y axis limits)
rangez	range of estimated values (z axis limits)
contourType	one of "filled.contour" or "contour"
limitz	restrict range of z (possible values "0-1", "0-100")
resolution	spatial grid resolution of displayed (higher is slower but better quality)
interior	show only convex hull TRUE/FALSE
ncol	number of colors for estimates
colors	color scheme of estimates from RColorBrewer. defaults to "RdYlGn"
reverseColors	inverse colour scheme
colorsP	color scale of location marks
centerMap	center of map, one of "Europe" and "Pacific"
pointShape	pch shape of location marks
showScale	show colour scale
textLabels	text labels
pointLabels	point size labels
pointColLabels	point colour labels
fontSize	font size
showModel	show model
fontType	font type
fontCol	font color
mask	boolean: Show output within range of points
maskRadius	numeric: Show output within range of points in km
pColor	color of location marks drawn
dataCenter	optional data.frame with two columns (longitude / latitude) for batch estimates of a series of spatial points
RadiusBatch	radius of batch spatial point estimates
terrestrial	show only estimates on land masses (1), oceans (-1) or all (0)
grid	show coordinate grid TRUE/FALSE
arrow	display north arrow TRUE/FALSE
scale	display scale TRUE/FALSE
mapType	Type of map. "Map" for simple estimates. "speed" for gradient (mainly for spread model)
titleMain	show main title
titleScale	show scale title
setAxisLabels	show axis/main/scale labels
mainLabel	main label
yLabel	y lab label
xLabel	y lab label
northSize	size of north arrow
scalSize	size of scale
scaleX	scale x orientation
scaleY	scale y orientation
NorthX	north arrow x orientation
NorthY	north arrow y orientation
scLabel	scale lab label
AxisSize	axis title font size
AxisLSize	axis label font size
cluster	show clusters
clusterCol	Cluster colors
pointDat	data frame of points to add to plot
MinMax	Min or Max, only for spread model
nMin	Number of minima to compare, only for spread model
minDist	Distance between minima/maxima, only for spread model
showMinOnMap	Show minima on map yes/no, only for spread model if maptype = "Minima/Maxima"
OLat	Origin Latitude for Cost-Surface Plot, only for spread model if maptype = "Cost-Surface"
OLong	Origin Longitude for Cost-Surface Plot, only for spread model if maptype = "Cost-Surface"
DestLat	Origin Latitude for Cost-Surface Plot, only for spread model if maptype = "Cost-Surface"
DestLong	Origin Longitude for Cost-Surface Plot, only for spread model if maptype = "Cost-Surface"

Pandora-IsoMemo/iso-app documentation built on Feb. 5, 2025, 11:26 p.m.