R/svaRetro.R

In PapenfussLab/svaRetro: Retrotransposed transcript detection from structural variants

#' svaRetro: a package for retrotransposed transcript detection
#'
#' svaRetro contains functions for detecting retrotransposed transcripts 
#' from structural variant calls.
#'
#' For more details on the features of StructuralVariantAnnotation, read the 
#' vignette:
#' `browseVignettes(package = "svaRetro")`
#'
#' @docType package
#' @name svaRetro
#' @import BiocGenerics
#' @import VariantAnnotation
#' @import StructuralVariantAnnotation
#' @import rtracklayer
#' @import Biostrings
#' @import GenomicRanges
#' @import GenomeInfoDb
#' @import S4Vectors
#' @importFrom dplyr %>%
#' @importFrom methods as is setMethod setGeneric
#' @importFrom rlang .data
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