merge_aux_info_from_file: Get auxiliary information from a file, and merge as JSON...

In Paradigm4/revealgenomics: SciDB REVEAL/Genomics API

Description

This is a wrapper for merge_aux_info_from_df() in that it fails gracefully if there is an error at any stage. Also it prints some output as it goes along.

Usage

merge_aux_info_from_file(
  master_df,
  aux_file_path,
  aux_info_colname,
  by.master,
  by.aux,
  verbose_read = TRUE,
  verbose_merge = FALSE
)

Arguments

master_df	Dataframe containing master merge information (e.g. names of individuals)
aux_file_path	File from which to read auxiliary information
aux_info_colname	Column name in which to store auxiliary information as JSON objects
verbose_read	boolean flag to print output on reading file
verbose_merge	boolean flag to print output while merging
by.x	Merge key on master dataframe
by.y	Merge key on auxiliary dataframe

Paradigm4/revealgenomics documentation built on April 7, 2020, 2:01 a.m.