Global functions | |
---|---|
.onAttach | Source code |
Choices | Man page |
DataLoader | Man page |
DataLoaderCopyNumberVariantFormatA | Man page |
DataLoaderVariantExomic | Man page |
DataLoaderVariantFormatA | Man page |
DataLoaderVariantGemini | Man page |
DataReaderCopyNumberVariantVariableColumns | Man page |
DataReaderVariantFormatA | Man page |
FeaturesetChoices | Man page |
FilterChoices | Man page |
PERMISSIONS_ARRAY | Source code |
PipelineChoices | Man page |
add_user_to_data_loaders | Man page Source code |
aggr_proj_study_by_pheno | Man page Source code |
api_register_biosamples | Man page Source code |
api_register_definitions | Man page Source code |
api_register_featuresets_experimentsets_measurementsets | Man page Source code |
api_register_individuals | Man page Source code |
api_register_measurements | Man page Source code |
api_register_ontology_from_definition_sheet | Man page Source code |
api_register_project_datasets | Source code |
apply_definition_constraints | Source code |
as.scidb_int64_cols | Man page Source code |
autoconvert_char | Man page Source code |
build_reference_gene_set | Man page Source code |
calculate_statistics_across_measurementsets | Man page Source code |
calculate_statistics_across_measurementsets_from_measurementdata | Man page Source code |
calculate_statistics_rnaquantification | Man page Source code |
calculate_statistics_variant | Man page Source code |
check_args_get | Source code |
check_args_search | Source code |
check_entity_exists_at_id | Source code |
check_if_revealgenomics_dataframes_equal | Man page |
combine_duplicate_column | Source code |
convertToExpressionSet | Man page Source code |
convert_attr_double_to_int64 | Source code |
convert_to_id_ranges | Source code |
count_unique_calls | Source code |
createDataLoader | Source code |
createDataReader | Source code |
createSpectralMap | Man page Source code |
cross_join_select_by_two_dims | Source code |
custom_scan | Man page Source code |
delete_dataset | Source code |
delete_dataset_internal | Source code |
delete_entity | Source code |
delete_featureset | Man page Source code |
delete_info_fields | Source code |
delete_project | Source code |
download_unpivot_info_join | Man page Source code |
drop_equi_join_dims | Source code |
entity_to_excel_sheet_converter | Source code |
estimate_measurementdata_download_size | Man page Source code |
feature_matching_level1 | Man page Source code |
filter_feature_df_by_cell_population | Source code |
filter_on_dataset_id_and_version | Man page Source code |
find_dataset_id_by_grep | Man page Source code |
find_dataset_id_by_metadata_value | Man page Source code |
find_entities_that_have_features | Source code |
find_matches_and_return_indices | Man page |
find_matches_with_db | Source code |
find_matching_featureset | Man page Source code |
find_namespace | Source code |
find_project_id_by_grep | Man page Source code |
flexible_mpm | Man page Source code |
form_selector_query_1d_array | Source code |
form_selector_query_secure_array | Source code |
formulate_base_selection_query | Source code |
formulate_build_literal_query | Man page Source code |
formulate_cell_population_data_tree_from_features_dataframe | Man page Source code |
formulate_equi_join_query | Source code |
formulate_feature_source_from_measuremenset | Man page Source code |
formulate_list_expression_set | Source code |
formulate_versioned_selection_query | Man page Source code |
full_arrayname | Man page Source code |
get_base_idname | Source code |
get_biosamples | Source code |
get_chromosome_key | Source code |
get_chromosome_key_from_cache | Source code |
get_dataset_max_version | Source code |
get_dataset_permissions_archive | Source code |
get_dataset_subelements | Source code |
get_dataset_version_lookup | Source code |
get_datasets | Source code |
get_definition_from_cache | Source code |
get_definitions | Source code |
get_delete_by_entity | Source code |
get_entity | Source code |
get_entity_class | Source code |
get_entity_data_class | Source code |
get_entity_from_cache | Man page Source code |
get_entity_from_entity_id | Man page Source code |
get_entity_id | Man page Source code |
get_entity_info | Source code |
get_entity_infoArrayExists | Man page Source code |
get_entity_names | Source code |
get_experiments | Man page Source code |
get_experimentset | Source code |
get_feature_synonym | Source code |
get_feature_synonym_from_cache | Source code |
get_features | Source code |
get_featuresets | Source code |
get_gene_symbol | Source code |
get_gene_symbol_from_cache | Source code |
get_genelist | Source code |
get_genelist_gene_symbols | Man page Source code |
get_idname | Source code |
get_individuals | Man page Source code |
get_infoArray | Source code |
get_int64fields | Source code |
get_list_of_arrays | Man page Source code |
get_logged_in_user | Man page Source code |
get_mandatory_fields_for_register_entity | Man page Source code |
get_max_id | Source code |
get_measurements | Man page Source code |
get_measurementsets | Source code |
get_metadata_attrkey | Source code |
get_metadata_attrkey_from_cache | Source code |
get_metadata_value | Source code |
get_metadata_value_from_cache | Source code |
get_ontology | Source code |
get_ontology_category | Source code |
get_ontology_category_from_cache | Source code |
get_ontology_from_cache | Source code |
get_projects | Source code |
get_referenceset | Source code |
get_revealgenomics_config | Source code |
get_search_by_entity | Source code |
get_variant_key | Source code |
get_variant_key_from_cache | Source code |
get_versioned_secure_metadata_entity | Source code |
grant_initial_access | Man page Source code |
handle_duplicate_name_source | Source code |
increment_dataset_version | Source code |
init_db | Man page Source code |
init_permissions_array | Source code |
init_r_object_cache | Man page Source code |
is_entity_cached | Man page Source code |
is_entity_secured | Source code |
is_entity_versioned | Source code |
join_info | Man page Source code |
join_info_unpivot | Man page Source code |
join_ontology_terms | Source code |
latest_version | Source code |
lean_esetSpectralMap | Man page Source code |
list_datasets | Man page Source code |
list_name_source_by_hierarchy | Source code |
list_ncol_in_aux_column | Man page Source code |
list_nrow_in_aux_column | Man page Source code |
list_users | Man page Source code |
load_helper_column_rename | Man page Source code |
load_helper_do_entity_specific_work | Man page Source code |
load_helper_handle_duplicates | Man page Source code |
load_helper_prepare_dataframe | Man page Source code |
load_helper_replace_local_ids | Man page Source code |
mandatory_fields | Man page Source code |
match_features | Man page Source code |
measurementdata_cache_download_subpart | Source code |
measurementdata_cache_get_download_size | Source code |
measurementdata_cache_get_num_subparts | Source code |
measurementdata_cache_is_cache_valid | Source code |
measurementdata_cache_return_metadata | Source code |
merge_aux_info_from_df | Man page Source code |
merge_aux_info_from_file | Man page Source code |
merge_gene_annotation_and_location | Source code |
myExcelLoader | Man page Source code |
myExcelReader | Man page Source code |
na_to_blank | Man page |
names_to_numbered_vec_by_uniqueness | Man page |
plot_heatmap_for_expression_set | Source code |
populate_measurements | Man page Source code |
prep_df_fields | Man page |
pretty_print | Man page |
print_dataset_subelements | Source code |
register_biosample | Source code |
register_chromosome_key | Source code |
register_copynumbervariant_variable_columns | Man page Source code |
register_dataset | Source code |
register_dataset_permissions_archive | Source code |
register_definitions | Source code |
register_entities_excel | Man page Source code |
register_entities_workbook | Man page Source code |
register_entity_flex_fields | Man page Source code |
register_exomic_variant | Source code |
register_experimentset | Source code |
register_expression_dataframe | Man page Source code |
register_expression_matrix | Man page Source code |
register_expression_matrix_client | Man page Source code |
register_feature | Source code |
register_feature_summary_at_measurementset | Source code |
register_feature_synonym | Source code |
register_features_from_gtf_file | Man page Source code |
register_features_from_gxf_file | Man page Source code |
register_featureset | Source code |
register_fusion | Source code |
register_gene_symbol | Man page Source code |
register_genelist | Man page Source code |
register_genelist_gene | Man page Source code |
register_in_memory_matrix | Man page Source code |
register_individual | Source code |
register_info | Source code |
register_mandatory_and_flex_fields | Man page Source code |
register_measurement | Source code |
register_measurementdata_cache | Source code |
register_measurementset | Source code |
register_metadata_attrkey | Source code |
register_metadata_value | Source code |
register_ontology_category | Source code |
register_ontology_term | Source code |
register_project | Source code |
register_r_object_at_key | Man page Source code |
register_referenceset | Source code |
register_tuple | Source code |
register_tuple_return_id | Source code |
register_variant | Source code |
register_variant_key | Source code |
register_versioned_secure_metadata_entity | Source code |
remove_old_versions_for_entity | Man page Source code |
remove_versions | Man page Source code |
report_missing_mandatory_fields | Source code |
retrieve_r_object_at_key | Man page Source code |
return_sub_indices | Man page Source code |
revealgenomics | Man page |
rg_connect | Source code |
rg_connect2 | Source code |
run_common_operations_on_search_metadata_output | Source code |
run_quality_control_checks | Man page Source code |
run_tests_dataframe | Man page Source code |
scidb_array_count | Source code |
scidb_array_head | Source code |
scidb_attribute_rename | Source code |
scidb_exists_array | Source code |
search_attributes | Source code |
search_biosamples | Source code |
search_copy_number_variant | Man page Source code |
search_copynumbervariant_variable_columns | Man page Source code |
search_cytof | Source code |
search_dataset_permissions_archive | Source code |
search_datasets | Source code |
search_definitions | Source code |
search_entity | Source code |
search_entity_flex_fields | Source code |
search_experimentsets | Source code |
search_expression | Man page Source code |
search_expression_by_one_measurementset_zero_or_more_features | Man page Source code |
search_expression_by_one_or_more_biosamples | Man page Source code |
search_feature_by_synonym | Man page Source code |
search_features | Man page Source code |
search_fusion | Man page Source code |
search_fusions_scidb | Source code |
search_gene_symbols | Source code |
search_genelist_gene | Source code |
search_individuals | Man page Source code |
search_measurementdata | Man page Source code |
search_measurementdata_cache | Source code |
search_measurements | Source code |
search_measurementsets | Source code |
search_metadata_attrkey | Man page Source code |
search_metadata_value | Man page Source code |
search_ontology_category | Man page Source code |
search_rnaquantification | Man page Source code |
search_rnaquantification_scidb | Source code |
search_variant | Man page Source code |
search_variants | Man page Source code |
search_variants_scidb | Man page Source code |
search_versioned_secure_metadata_entity | Man page Source code |
search_versioned_secure_metadata_entity_by_requested_attributes | Man page Source code |
select_from_1d_entity | Man page Source code |
set_permissions | Man page Source code |
show_dataset_permissions | Man page Source code |
show_permissions_inner | Source code |
show_roles_for_user | Man page Source code |
show_user_permissions | Man page Source code |
split_synonyms_by_pipe | Source code |
template_helper_assign_experiment_entity | Man page Source code |
template_helper_assign_measurement_entity | Man page Source code |
template_helper_convert_names | Man page Source code |
template_helper_enforce_columns_defined | Man page Source code |
template_helper_enforce_mandatory_columns_present | Man page Source code |
template_helper_extract_definitions | Man page Source code |
template_helper_extract_pipeline_meta_info | Man page Source code |
template_helper_extract_record_related_rows | Man page Source code |
template_helper_formulate_file_path | Man page Source code |
template_helper_suffix_by_entity | Man page Source code |
template_linker | Man page |
test_dataframe_formatting | Source code |
test_mandatory_fields | Source code |
test_register_biosample | Source code |
test_register_chromosome_key | Source code |
test_register_copynumbervariant_variable_columns | Source code |
test_register_dataset | Source code |
test_register_dataset_permissions_archive | Source code |
test_register_definition | Source code |
test_register_exomic_variant | Source code |
test_register_experimentset | Source code |
test_register_expression_dataframe | Source code |
test_register_expression_matrix | Source code |
test_register_feature | Source code |
test_register_feature_synonym | Source code |
test_register_featureset | Source code |
test_register_fusion | Source code |
test_register_gene_symbol | Source code |
test_register_genelist | Source code |
test_register_genelist_gene | Source code |
test_register_individual | Source code |
test_register_measurementset | Source code |
test_register_metadata_attrkey | Source code |
test_register_metadata_value | Source code |
test_register_ontology | Source code |
test_register_ontology_category | Source code |
test_register_project | Source code |
test_register_referenceset | Source code |
test_register_variant | Source code |
test_register_variant_key | Source code |
test_register_versioned_secure_metadata_entity | Source code |
test_return_carriage_in_df | Source code |
test_unique_fields | Source code |
unique_fields | Source code |
unpivot | Source code |
unpivot_key_value_pairs | Source code |
unpivot_variant_data | Source code |
update_chromosome_key_cache | Source code |
update_definition_cache | Source code |
update_entity_cache | Source code |
update_entity_via_excel_loader | Source code |
update_feature_synonym_cache | Source code |
update_gene_symbol_cache | Source code |
update_mandatory_and_info_fields | Source code |
update_metadata_attrkey_cache | Source code |
update_metadata_value_cache | Source code |
update_ontology_cache | Source code |
update_ontology_category_cache | Source code |
update_tuple | Source code |
update_variant_key_cache | Source code |
upload_variant_data_in_steps | Source code |
use_ghEnv_if_null | Source code |
user_confirms_action | Man page |
yaml_to_attr_string | Source code |
yaml_to_dim_str | Source code |
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