search_copy_number_variant: Search copy number variant data

In Paradigm4/revealgenomics: SciDB REVEAL/Genomics API

Description

Function to search copy number variant data

Usage

search_copy_number_variant(
  measurementset,
  feature = NULL,
  biosample = NULL,
  con = NULL
)

Arguments

measurementset	(Mandatory) dataframe containing pipeline information; typically output of a get_measurementsets(measurementset_id = ...) or search_measurementsets(dataset_id = ..) call
feature	(Optional) dataframe containing feature information; typically output of a search_features(gene_symbol = ...) call. If not specified, function returns all features available by other search parameters
biosample	(Optional) dataframe containing biosample information; typically output of a search_biosamples(dataset_id = ..) call. If not specified, function returns all biosamples available by other search parameters
con	(Optional) database connection object; typically output of rg_connect2() call. If not specified, connection object is formulated from internally stored values of rg_connect() call

Paradigm4/revealgenomics documentation built on April 7, 2020, 2:01 a.m.