Function to search expression matrix, proteomics matrix, CNV matrix; allows slicing across multiple
dimensions. However measurementset
(i.e. pipeline) must be supplied
(currently allows searching one pipeline at a time)
1 2 3 4 5 6 7 8 9 |
measurementset |
(Mandatory) dataframe containing pipeline information;
typically output of a
|
biosample |
(Optional) dataframe containing biosample information;
typically output of a
|
feature |
(Optional) dataframe containing feature information;
typically output of a
|
formExpressionSet |
(default: TRUE) whether to return result as a Bioconductor ExpressionSet object |
featureNameAsFeatureIdentifier |
(default: TRUE) whether to use FEATURE.name or FEATURE.gene_symnbol as rowname of ExpressionSet object |
biosample_ref |
(Optional) data-frame containing all biosamples in a study,
i.e. typically output of |
con |
(Optional) database connection object; typically output of |
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