register_features_from_gxf_file: Register features from GTF/GFF3 file

In Paradigm4/revealgenomics: SciDB REVEAL/Genomics API

Description

Register features from GTF/GFF3 file

Usage

register_features_from_gxf_file(
  featureset_name,
  gxf_filepath,
  register_transcripts,
  gxf_format = c("GFF3", "GTF"),
  con = NULL
)

Arguments

featureset_name	Exact featureset name at which to register features
gxf_filepath	Path to GTF/GFF3 file
register_transcripts	whether to register_transcripts (TRUE) or not (FALSE)
gxf_format	one of 'GFF3', 'GTF'

Value

list containing feature id-s of registered genes and transcripts (if selected)

Paradigm4/revealgenomics documentation built on April 7, 2020, 2:01 a.m.