register_expression_matrix_client: Upload expression matrix file

Description Usage Arguments

View source: R/functions-register-measurementdata.R

Description

This wrapper function shows an example of how to call the internal upload function 'register_expression_dataframe“

Usage

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register_expression_matrix_client(filepath, measurementset, featureset,
  file_format = c("tall", "wide"), biosample_ref = NULL,
  feature_ref = NULL, con = NULL)

Arguments

filepath

can exist on SciDB server or client

measurementset

dataframe containing pipeline information for measurementset_id at which to insert expression data; retrieve using get_measurementsets(measurementset_id = measurementset_id)

featureset

dataframe containing featureSet information for featureset_id at which to insert expression data; retrieve using get_featureset(featureset_id = featureset_id)

file_format

must be tall or wide

biosample_ref

(optional) reference data-frame containing information for all biosamples in current study / dataset

feature_ref

(optional) reference data-frame containing information for all features in current featureSet


Paradigm4/revealgenomics documentation built on Oct. 4, 2018, 8:19 p.m.