register_expression_matrix_client: Upload expression matrix file

In Paradigm4/revealgenomics: SciDB REVEAL/Genomics API

Description

This wrapper function shows an example of how to call the internal upload function register_expression_dataframe

Usage

register_expression_matrix_client(
  filepath,
  measurementset,
  featureset,
  file_format = c("tall", "wide"),
  biosample_ref = NULL,
  feature_ref = NULL,
  con = NULL
)

Arguments

filepath	can exist on SciDB server or client
measurementset	dataframe containing pipeline information for measurementset_id at which to insert expression data; retrieve using get_measurementsets(measurementset_id = measurementset_id)
featureset	dataframe containing featureSet information for featureset_id at which to insert expression data; retrieve using get_featureset(featureset_id = featureset_id)
file_format	must be tall or wide
biosample_ref	(optional) reference data-frame containing information for all biosamples in current study / dataset
feature_ref	(optional) reference data-frame containing information for all features in current featureSet

Paradigm4/revealgenomics documentation built on April 7, 2020, 2:01 a.m.