Man pages for ParhamLab/PeptidePCA
PCA using physicochemical properties of HLA
| conv.features | Create converted feature matrix using a list of ligands and a... |
| conv.features.list | Create converted feature matrix using a list of list of... |
| convmat.24 | Amino acid conversion matrix with 24 properties |
| convmat.4 | Amino acid conversion matrix with 4 properties |
| LAPP | PeptidePCA |
| ligands.4A | Ligand sequences from 4 HLA-A alleles |
| make.conv.table | Read in amino acid table |
| pep.pca | Perform PCA on HLA features |
| pep.pca.plot | Plot LAPP PCA |
| read.ligands | Read in all ligand files in a folder |
